PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3LBX
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (54 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE ERYTHROCYTE SPECTRIN TETRAMERIZATION DOMAIN COMPLEX
Authors
:
J. J. Ipsaro, S. L. Harper, T. E. Messick, R. Marmorstein, A. Mondragon, D. W. Speicher
Date
:
08 Jan 10 (Deposition) - 09 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Spectrin, Tetramer, Complex, Three-Helix Bundle, Alpha Helix, Partial Repeat, Helical Linker, Actin Capping, Actin-Binding, Cell Shape, Cytoskeleton, Disease Mutation, Elliptocytosis, Hereditary Hemolytic Anemia, Pyropoikilocytosis, Sh3 Domain, Phosphoprotein, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Ipsaro, S. L. Harper, T. E. Messick, R. Marmorstein, A. Mondragon D. W. Speicher
Crystal Structure And Functional Interpretation Of The Erythrocyte Spectrin Tetramerization Domain Complex.
Blood V. 115 4843 2010
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(22, 22)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_001324 (I24S, chain A, )
02: VAR_001328 (R28C, chain A, )
03: VAR_001325 (R28H, chain A, )
04: VAR_001326 (R28L, chain A, )
05: VAR_001327 (R28S, chain A, )
06: VAR_001329 (V31A, chain A, )
07: VAR_001330 (R34W, chain A, )
08: VAR_001331 (R41W, chain A, )
09: VAR_001332 (R45S, chain A, )
10: VAR_001333 (R45T, chain A, )
11: VAR_001334 (G46V, chain A, )
12: VAR_001335 (K48R, chain A, )
13: VAR_001336 (L49F, chain A, )
14: VAR_038506 (S109F, chain A, )
15: VAR_001337 (G151D, chain A, )
16: VAR_038507 (D152N, chain A, )
17: VAR_001357 (A2018G, chain B, )
18: VAR_001358 (S2019P, chain B, )
19: VAR_001359 (A2023V, chain B, )
20: VAR_001360 (W2024R, chain B, )
21: VAR_001361 (L2025R, chain B, )
22: VAR_001362 (A2053P, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_001324
I
24
S
SPTA1_HUMAN
Disease (EL2)
---
A
I
24
S
02
UniProt
VAR_001328
R
28
C
SPTA1_HUMAN
Disease (EL2)
---
A
R
28
C
03
UniProt
VAR_001325
R
28
H
SPTA1_HUMAN
Disease (EL2)
28934004
A
R
28
H
04
UniProt
VAR_001326
R
28
L
SPTA1_HUMAN
Disease (EL2)
---
A
R
28
L
05
UniProt
VAR_001327
R
28
S
SPTA1_HUMAN
Disease (EL2)
28934005
A
R
28
S
06
UniProt
VAR_001329
V
31
A
SPTA1_HUMAN
Disease (EL2)
---
A
V
31
A
07
UniProt
VAR_001330
R
34
W
SPTA1_HUMAN
Disease (EL2)
---
A
R
34
W
08
UniProt
VAR_001331
R
41
W
SPTA1_HUMAN
Disease (EL2)
---
A
R
41
W
09
UniProt
VAR_001332
R
45
S
SPTA1_HUMAN
Disease (EL2)
---
A
R
45
S
10
UniProt
VAR_001333
R
45
T
SPTA1_HUMAN
Disease (EL2)
---
A
R
45
T
11
UniProt
VAR_001334
G
46
V
SPTA1_HUMAN
Disease (EL2)
---
A
G
46
V
12
UniProt
VAR_001335
K
48
R
SPTA1_HUMAN
Disease (HPP)
---
A
K
48
R
13
UniProt
VAR_001336
L
49
F
SPTA1_HUMAN
Disease (EL2)
---
A
L
49
F
14
UniProt
VAR_038506
S
109
F
SPTA1_HUMAN
Polymorphism
3737521
A
S
109
F
15
UniProt
VAR_001337
G
151
D
SPTA1_HUMAN
Disease (EL2)
---
A
G
151
D
16
UniProt
VAR_038507
D
152
N
SPTA1_HUMAN
Polymorphism
16840544
A
D
152
N
17
UniProt
VAR_001357
A
2018
G
SPTB1_HUMAN
Disease (EL3)
---
B
A
2018
G
18
UniProt
VAR_001358
S
2019
P
SPTB1_HUMAN
Disease (EL3)
---
B
S
2019
P
19
UniProt
VAR_001359
A
2023
V
SPTB1_HUMAN
Disease (EL3)
---
B
A
2023
V
20
UniProt
VAR_001360
W
2024
R
SPTB1_HUMAN
Disease (EL3)
---
B
W
2024
R
21
UniProt
VAR_001361
L
2025
R
SPTB1_HUMAN
Disease (EL3)
---
B
L
2025
R
22
UniProt
VAR_001362
A
2053
P
SPTB1_HUMAN
Disease (EL3)
---
B
A
2053
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.2b (A:19-88)
Exon 1.3 (A:89-130)
Exon 1.4 (A:131-158)
Exon 2.26 (B:1900-1931 (gaps))
Exon 2.27 (B:1934-1979)
Exon 2.28 (B:1980-2008)
Exon 2.29 (B:2008-2073)
Exon 2.30 (B:2074-2083)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.2b
02: Boundary 1.2b/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 2.25/2.26
06: Boundary 2.26/2.27
07: Boundary 2.27/2.28
08: Boundary 2.28/2.29
09: Boundary 2.29/2.30
10: Boundary 2.30/2.31c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000368147
1b
ENSE00001849919
chr1:
158656445-158656284
162
SPTA1_HUMAN
1-8
8
0
-
-
1.2b
ENST00000368147
2b
ENSE00001075897
chr1:
158655137-158654898
240
SPTA1_HUMAN
9-88
80
1
A:19-88
70
1.3
ENST00000368147
3
ENSE00001075943
chr1:
158653286-158653161
126
SPTA1_HUMAN
89-130
42
1
A:89-130
42
1.4
ENST00000368147
4
ENSE00001075925
chr1:
158651457-158651317
141
SPTA1_HUMAN
131-177
47
1
A:131-158
28
1.5
ENST00000368147
5
ENSE00001075935
chr1:
158650519-158650373
147
SPTA1_HUMAN
178-226
49
0
-
-
1.6
ENST00000368147
6
ENSE00001075933
chr1:
158648324-158648191
134
SPTA1_HUMAN
227-271
45
0
-
-
1.7b
ENST00000368147
7b
ENSE00001075907
chr1:
158647624-158647480
145
SPTA1_HUMAN
271-319
49
0
-
-
1.8
ENST00000368147
8
ENSE00001075956
chr1:
158646085-158645931
155
SPTA1_HUMAN
320-371
52
0
-
-
1.9
ENST00000368147
9
ENSE00001075916
chr1:
158644465-158644330
136
SPTA1_HUMAN
371-416
46
0
-
-
1.10
ENST00000368147
10
ENSE00001075972
chr1:
158644220-158644119
102
SPTA1_HUMAN
417-450
34
0
-
-
1.11
ENST00000368147
11
ENSE00001075927
chr1:
158641986-158641849
138
SPTA1_HUMAN
451-496
46
0
-
-
1.12
ENST00000368147
12
ENSE00001659491
chr1:
158641243-158641133
111
SPTA1_HUMAN
497-533
37
0
-
-
1.13
ENST00000368147
13
ENSE00001075969
chr1:
158639576-158639499
78
SPTA1_HUMAN
534-559
26
0
-
-
1.14
ENST00000368147
14
ENSE00001075904
chr1:
158639353-158639198
156
SPTA1_HUMAN
560-611
52
0
-
-
1.15
ENST00000368147
15
ENSE00001075908
chr1:
158637852-158637648
205
SPTA1_HUMAN
612-680
69
0
-
-
1.16
ENST00000368147
16
ENSE00001075974
chr1:
158636287-158636106
182
SPTA1_HUMAN
680-740
61
0
-
-
1.17
ENST00000368147
17
ENSE00001075895
chr1:
158632735-158632492
244
SPTA1_HUMAN
741-822
82
0
-
-
1.18
ENST00000368147
18
ENSE00001075939
chr1:
158631199-158631077
123
SPTA1_HUMAN
822-863
42
0
-
-
1.19
ENST00000368147
19
ENSE00001075951
chr1:
158627484-158627267
218
SPTA1_HUMAN
863-935
73
0
-
-
1.20
ENST00000368147
20
ENSE00001075967
chr1:
158626446-158626354
93
SPTA1_HUMAN
936-966
31
0
-
-
1.21
ENST00000368147
21
ENSE00001075892
chr1:
158624538-158624401
138
SPTA1_HUMAN
967-1012
46
0
-
-
1.22
ENST00000368147
22
ENSE00001075954
chr1:
158623215-158623064
152
SPTA1_HUMAN
1013-1063
51
0
-
-
1.23
ENST00000368147
23
ENSE00001075906
chr1:
158622443-158622257
187
SPTA1_HUMAN
1063-1125
63
0
-
-
1.24
ENST00000368147
24
ENSE00001075924
chr1:
158621258-158621157
102
SPTA1_HUMAN
1126-1159
34
0
-
-
1.25
ENST00000368147
25
ENSE00001075891
chr1:
158619737-158619646
92
SPTA1_HUMAN
1160-1190
31
0
-
-
1.26
ENST00000368147
26
ENSE00001075901
chr1:
158618443-158618299
145
SPTA1_HUMAN
1190-1238
49
0
-
-
1.27
ENST00000368147
27
ENSE00001075973
chr1:
158617510-158617329
182
SPTA1_HUMAN
1239-1299
61
0
-
-
1.28
ENST00000368147
28
ENSE00001075889
chr1:
158615384-158615285
100
SPTA1_HUMAN
1299-1332
34
0
-
-
1.29
ENST00000368147
29
ENSE00001075941
chr1:
158615175-158614978
198
SPTA1_HUMAN
1333-1398
66
0
-
-
1.30
ENST00000368147
30
ENSE00001075949
chr1:
158614186-158614043
144
SPTA1_HUMAN
1399-1446
48
0
-
-
1.31
ENST00000368147
31
ENSE00001075899
chr1:
158613215-158613112
104
SPTA1_HUMAN
1447-1481
35
0
-
-
1.32
ENST00000368147
32
ENSE00001075911
chr1:
158612766-158612604
163
SPTA1_HUMAN
1481-1535
55
0
-
-
1.33a
ENST00000368147
33a
ENSE00001075965
chr1:
158612332-158612201
132
SPTA1_HUMAN
1536-1579
44
0
-
-
1.34
ENST00000368147
34
ENSE00001075890
chr1:
158609797-158609660
138
SPTA1_HUMAN
1580-1625
46
0
-
-
1.35a
ENST00000368147
35a
ENSE00001075931
chr1:
158609476-158609372
105
SPTA1_HUMAN
1626-1660
35
0
-
-
1.36
ENST00000368147
36
ENSE00001075947
chr1:
158608031-158607823
209
SPTA1_HUMAN
1661-1730
70
0
-
-
1.37
ENST00000368147
37
ENSE00001075959
chr1:
158606551-158606431
121
SPTA1_HUMAN
1730-1770
41
0
-
-
1.38
ENST00000368147
38
ENSE00001075970
chr1:
158605824-158605703
122
SPTA1_HUMAN
1771-1811
41
0
-
-
1.39a
ENST00000368147
39a
ENSE00001075914
chr1:
158604465-158604333
133
SPTA1_HUMAN
1811-1855
45
0
-
-
1.40
ENST00000368147
40
ENSE00001075929
chr1:
158597513-158597415
99
SPTA1_HUMAN
1856-1888
33
0
-
-
1.41b
ENST00000368147
41b
ENSE00001446421
chr1:
158596788-158596629
160
SPTA1_HUMAN
1889-1942
54
0
-
-
1.42
ENST00000368147
42
ENSE00001075928
chr1:
158596012-158595936
77
SPTA1_HUMAN
1942-1967
26
0
-
-
1.43a
ENST00000368147
43a
ENSE00001075888
chr1:
158592982-158592773
210
SPTA1_HUMAN
1968-2037
70
0
-
-
1.44b
ENST00000368147
44b
ENSE00001075971
chr1:
158590256-158589960
297
SPTA1_HUMAN
2038-2136
99
0
-
-
1.45a
ENST00000368147
45a
ENSE00001075921
chr1:
158589124-158589012
113
SPTA1_HUMAN
2137-2174
38
0
-
-
1.46b
ENST00000368147
46b
ENSE00001723857
chr1:
158587846-158587829
18
SPTA1_HUMAN
2174-2180
7
0
-
-
1.47a
ENST00000368147
47a
ENSE00001075918
chr1:
158587378-158587327
52
SPTA1_HUMAN
2180-2197
18
0
-
-
1.48a
ENST00000368147
48a
ENSE00001075937
chr1:
158585193-158585006
188
SPTA1_HUMAN
2198-2260
63
0
-
-
1.49b
ENST00000368147
49b
ENSE00001075961
chr1:
158584096-158584043
54
SPTA1_HUMAN
2260-2278
19
0
-
-
1.50
ENST00000368147
50
ENSE00001075952
chr1:
158583657-158583511
147
SPTA1_HUMAN
2278-2327
50
0
-
-
1.51a
ENST00000368147
51a
ENSE00001075963
chr1:
158582751-158582607
145
SPTA1_HUMAN
2327-2375
49
0
-
-
1.53b
ENST00000368147
53b
ENSE00001446423
chr1:
158581179-158580396
784
SPTA1_HUMAN
2376-2416
41
0
-
-
2.1
ENST00000389721
1
ENSE00002200989
chr14:
65289866-65289665
202
SPTB1_HUMAN
1-50
50
0
-
-
2.2
ENST00000389721
2
ENSE00001692272
chr14:
65271808-65271657
152
SPTB1_HUMAN
50-100
51
0
-
-
2.3
ENST00000389721
3
ENSE00001642694
chr14:
65270498-65270325
174
SPTB1_HUMAN
101-158
58
0
-
-
2.4
ENST00000389721
4
ENSE00001647147
chr14:
65269035-65268944
92
SPTB1_HUMAN
159-189
31
0
-
-
2.5
ENST00000389721
5
ENSE00001592915
chr14:
65268552-65268472
81
SPTB1_HUMAN
189-216
28
0
-
-
2.6
ENST00000389721
6
ENSE00001601006
chr14:
65268118-65268003
116
SPTB1_HUMAN
216-255
40
0
-
-
2.7
ENST00000389721
7
ENSE00001788289
chr14:
65267586-65267474
113
SPTB1_HUMAN
255-292
38
0
-
-
2.8
ENST00000389721
8
ENSE00001643410
chr14:
65266652-65266465
188
SPTB1_HUMAN
293-355
63
0
-
-
2.9
ENST00000389721
9
ENSE00001793364
chr14:
65264564-65264447
118
SPTB1_HUMAN
355-394
40
0
-
-
2.10
ENST00000389721
10
ENSE00001786358
chr14:
65263433-65263275
159
SPTB1_HUMAN
395-447
53
0
-
-
2.11
ENST00000389721
11
ENSE00001689221
chr14:
65262357-65262055
303
SPTB1_HUMAN
448-548
101
0
-
-
2.12
ENST00000389721
12
ENSE00001643743
chr14:
65261335-65261185
151
SPTB1_HUMAN
549-599
51
0
-
-
2.13
ENST00000389721
13
ENSE00001699666
chr14:
65260585-65259715
871
SPTB1_HUMAN
599-889
291
0
-
-
2.14
ENST00000389721
14
ENSE00001604309
chr14:
65258574-65258437
138
SPTB1_HUMAN
889-935
47
0
-
-
2.15
ENST00000389721
15
ENSE00001594267
chr14:
65253878-65253122
757
SPTB1_HUMAN
935-1187
253
0
-
-
2.16
ENST00000389721
16
ENSE00001597703
chr14:
65252669-65252467
203
SPTB1_HUMAN
1188-1255
68
0
-
-
2.17
ENST00000389721
17
ENSE00000392073
chr14:
65252345-65252255
91
SPTB1_HUMAN
1255-1285
31
0
-
-
2.18
ENST00000389721
18
ENSE00000867578
chr14:
65251111-65250965
147
SPTB1_HUMAN
1286-1334
49
0
-
-
2.19
ENST00000389721
19
ENSE00001506737
chr14:
65249271-65249008
264
SPTB1_HUMAN
1335-1422
88
0
-
-
2.20
ENST00000389721
20
ENSE00001506736
chr14:
65246649-65246443
207
SPTB1_HUMAN
1423-1491
69
0
-
-
2.21
ENST00000389721
21
ENSE00000902497
chr14:
65245964-65245875
90
SPTB1_HUMAN
1492-1521
30
0
-
-
2.22
ENST00000389721
22
ENSE00000658448
chr14:
65242121-65241843
279
SPTB1_HUMAN
1522-1614
93
0
-
-
2.23
ENST00000389721
23
ENSE00000392079
chr14:
65241245-65241115
131
SPTB1_HUMAN
1615-1658
44
0
-
-
2.24
ENST00000389721
24
ENSE00000867584
chr14:
65240142-65239938
205
SPTB1_HUMAN
1658-1726
69
0
-
-
2.25
ENST00000389721
25
ENSE00000867585
chr14:
65239672-65239298
375
SPTB1_HUMAN
1727-1851
125
0
-
-
2.26
ENST00000389721
26
ENSE00000902494
chr14:
65237847-65237603
245
SPTB1_HUMAN
1852-1933
82
1
B:1900-1931 (gaps)
38
2.27
ENST00000389721
27
ENSE00000902493
chr14:
65236446-65236308
139
SPTB1_HUMAN
1933-1979
47
1
B:1934-1979
46
2.28
ENST00000389721
28
ENSE00000392084
chr14:
65235836-65235752
85
SPTB1_HUMAN
1980-2008
29
1
B:1980-2008
29
2.29
ENST00000389721
29
ENSE00000867589
chr14:
65234577-65234381
197
SPTB1_HUMAN
2008-2073
66
1
B:2008-2073
66
2.30
ENST00000389721
30
ENSE00000658438
chr14:
65234070-65234021
50
SPTB1_HUMAN
2074-2090
17
1
B:2074-2083
10
2.31c
ENST00000389721
31c
ENSE00001506734
chr14:
65233519-65233148
372
SPTB1_HUMAN
2090-2137
48
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Spectrin_3lbxA01 (A:53-156)
1b: PFAM_Spectrin_3lbxB01 (B:2009-2083)
1c: PFAM_Spectrin_3lbxB02 (B:2009-2083)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Spectrin]
(10)
Family
:
Spectrin
(10)
Homo sapiens (Human)
(8)
1a
Spectrin-3lbxA01
A:53-156
1b
Spectrin-3lbxB01
B:2009-2083
1c
Spectrin-3lbxB02
B:2009-2083
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (61 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3LBX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help