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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3LB6
Asym. Unit
Info
Asym.Unit (257 KB)
Biol.Unit 1 (121 KB)
Biol.Unit 2 (131 KB)
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(1)
Title
:
THE STRUCTURE OF IL-13 IN COMPLEX WITH IL-13RALPHA2
Authors
:
P. J. Lupardus, K. C. Garcia, M. E. Birnbaum
Date
:
07 Jan 10 (Deposition) - 16 Mar 10 (Release) - 28 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Cytokine, Receptor, Decoy, Decoy Receptor, Glycoprotein, Secreted, Signaling Protein-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Lupardus, M. E. Birnbaum, K. C. Garcia
Molecular Basis For Shared Cytokine Recognition Revealed In The Structure Of An Unusually High Affinity Complex Between Il-13 And Il-13Ralpha2.
Structure V. 18 332 2010
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: N-DIMETHYL-LYSINE (MLYa)
2b: N-DIMETHYL-LYSINE (MLYb)
2c: N-DIMETHYL-LYSINE (MLYc)
2d: N-DIMETHYL-LYSINE (MLYd)
2e: N-DIMETHYL-LYSINE (MLYe)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
MLY
5
Mod. Amino Acid
N-DIMETHYL-LYSINE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU C:46 , PHE C:172 , ASN C:215
BINDING SITE FOR RESIDUE NAG C 501
2
AC2
SOFTWARE
HOH A:114 , ASP C:93 , HOH C:383 , HOH C:384
BINDING SITE FOR RESIDUE CA C 381
3
AC3
SOFTWARE
PHE D:172 , ASN D:215
BINDING SITE FOR RESIDUE NAG D 501
4
AC4
SOFTWARE
ASP D:93 , HOH D:382 , HOH D:383 , HOH D:390
BINDING SITE FOR RESIDUE CA D 381
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010037 (R111Q, chain A/B, )
2: VAR_021256 (W111R, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010037
R
144
Q
IL13_HUMAN
Polymorphism
20541
A/B
R
111
Q
2
UniProt
VAR_021256
W
111
R
I13R2_HUMAN
Polymorphism
17095919
C/D
W
111
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 10)
Info
All PROSITE Patterns/Profiles
1: FN3 (C:34-134,D:34-134|C:139-235,D:139-...)
2: INTERLEUKIN_4_13 (A:10-37,B:10-37)
3: HEMATOPO_REC_S_F2 (C:153-184,D:153-184)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
I13R2_HUMAN
34-134
139-235
240-333
6
C:34-134
D:34-134
C:139-235
D:139-235
C:240-328
D:240-331
2
INTERLEUKIN_4_13
PS00838
Interleukins -4 and -13 signature.
IL13_HUMAN
43-70
2
A:10-37
B:10-37
3
HEMATOPO_REC_S_F2
PS01356
Short hematopoietin receptor family 2 signature.
I13R2_HUMAN
153-184
2
C:153-184
D:153-184
[
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Exons
(4, 8)
Info
All Exons
Exon 1.3a (A:5-25 | B:5-25)
Exon 1.3d (A:26-43 | B:26-43)
Exon 1.4 (A:44-78 | B:44-78)
Exon 1.5e (A:79-113 | B:79-113)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.3d
3: Boundary 1.3d/1.4
4: Boundary 1.4/1.5e
5: Boundary 1.5e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000304506
3a
ENSE00001124039
chr5:
131993865-131994052
188
IL13_HUMAN
1-58
58
2
A:5-25
B:5-25
21
21
1.3d
ENST00000304506
3d
ENSE00001170203
chr5:
131995110-131995163
54
IL13_HUMAN
59-76
18
2
A:26-43
B:26-43
18
18
1.4
ENST00000304506
4
ENSE00001170195
chr5:
131995416-131995520
105
IL13_HUMAN
77-111
35
2
A:44-78
B:44-78
35
35
1.5e
ENST00000304506
5e
ENSE00001124031
chr5:
131995867-131996802
936
IL13_HUMAN
112-146
35
2
A:79-113
B:79-113
35
35
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3lb6a_ (A:)
1b: SCOP_d3lb6b_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Interleukin-13 (IL-13)
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3lb6a_
A:
1b
d3lb6b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3lb6A00 (A:5-113)
1b: CATH_3lb6B00 (B:5-113)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
3lb6A00
A:5-113
1b
3lb6B00
B:5-113
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IL13_3lb6B01 (B:5-24)
1b: PFAM_IL13_3lb6B02 (B:5-24)
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Clan
:
4H_Cytokine
(48)
Family
:
IL13
(3)
Homo sapiens (Human)
(3)
1a
IL13-3lb6B01
B:5-24
1b
IL13-3lb6B02
B:5-24
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (257 KB)
Header - Asym.Unit
Biol.Unit 1 (121 KB)
Header - Biol.Unit 1
Biol.Unit 2 (131 KB)
Header - Biol.Unit 2
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