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3LB0
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Biol.Unit 1 (101 KB)
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Title
:
CRYSTAL STRUCTURE OF THE 3-DEHYDROQUINATE DEHYDRATASE (AROD) FROM SALMONELLA TYPHIMURIUM LT2 WITH CITRATE BOUND TO THE ACTIVE SITE.
Authors
:
G. Minasov, S. H. Light, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
07 Jan 10 (Deposition) - 26 Jan 10 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
3-Dehydroquinate Dehydratase, Arod, Shikimate Pathway, Idp90922, Csgid, Citrate, Amino-Acid Biosynthesis, Aromatic Amino Acid Biosynthesis, Schiff Base, Structural Genomics, Center For Structural Genomics Of Infectious Diseases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, S. H. Light, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 With Citrate Bound To The Active Site.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: FORMIC ACID (FMTa)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
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No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
FMT
1
Ligand/Ion
FORMIC ACID
3
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(3, 3)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:21 , GLU A:46 , ARG A:48 , ARG A:82 , HIS A:143 , LYS A:170 , MET A:203 , MET A:205 , ARG A:213 , PHE A:225 , SER A:232 , ALA A:233 , GLN A:236 , HOH A:508
BINDING SITE FOR RESIDUE CIT A 253
2
AC2
SOFTWARE
SER A:21 , TYR A:37 , GLY A:226 , ALA A:227 , VAL A:228 , LYS A:230 , GLN A:236
BINDING SITE FOR RESIDUE FMT A 254
3
AC3
SOFTWARE
HIS B:143 , LYS B:170 , ALA B:172 , MET B:203 , MET B:205 , ARG B:213 , PHE B:225 , HOH B:509 , HOH B:542 , HOH B:543 , HOH B:591
BINDING SITE FOR RESIDUE TRS B 253
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PROSITE Patterns/Profiles
(1, 2)
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1: DEHYDROQUINASE_I (A:114-144,B:114-144)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEHYDROQUINASE_I
PS01028
Dehydroquinase class I active site.
AROD_SALTY
114-144
2
A:114-144
B:114-144
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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1a: SCOP_d3lb0a_ (A:)
1b: SCOP_d3lb0b_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
automated matches
(113)
Protein domain
:
automated matches
(113)
Salmonella enterica [TaxId: 99287]
(5)
1a
d3lb0a_
A:
1b
d3lb0b_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_3lb0A00 (A:-7-251)
1b: CATH_3lb0B00 (B:-7-251)
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Class
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Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Enterica serovar typhimurium (Salmonella enterica subsp)
(3)
1a
3lb0A00
A:-7-251
1b
3lb0B00
B:-7-251
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DHquinase_I_3lb0B01 (B:19-247)
1b: PFAM_DHquinase_I_3lb0B02 (B:19-247)
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Clan
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TIM_barrel
(694)
Family
:
DHquinase_I
(17)
Salmonella typhimurium
(7)
1a
DHquinase_I-3lb0B01
B:19-247
1b
DHquinase_I-3lb0B02
B:19-247
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