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3LAP
Asym. Unit
Info
Asym.Unit (198 KB)
Biol.Unit 1 (190 KB)
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(1)
Title
:
THE STRUCTURE OF THE INTERMEDIATE COMPLEX OF THE ARGININE REPRESSOR FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO ITS DNA OPERATOR AND L-CANAVANINE.
Authors
:
L. T. Cherney, M. M. Cherney, C. R. Garen, M. N. G. James, Tb Structural Consortium (Tbsgc)
Date
:
06 Jan 10 (Deposition) - 05 May 10 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Mycobacterium Tuberculosis, Arginine Repressor, Dna Binding, Argr- Dna-Canavanine Ternary Complex, Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Mycobacterium Tuberculosis Structural Proteomics Project, Xmtb, Amino-Acid Biosynthesis, Arginine Biosynthesis, Cytoplasm, Dna-Binding, Repressor, Transcription, Transcription Regulation, Transcription Regulator, Transcription Regulator-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. T. Cherney, M. M. Cherney, C. R. Garen, M. N. James
Crystal Structure Of The Intermediate Complex Of The Arginine Repressor From Mycobacterium Tuberculosis Bound With Its Dna Operator Reveals Detailed Mechanism Of Arginine Repression.
J. Mol. Biol. V. 399 240 2010
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: L-CANAVANINE (GGBa)
1b: L-CANAVANINE (GGBb)
1c: L-CANAVANINE (GGBc)
1d: L-CANAVANINE (GGBd)
1e: L-CANAVANINE (GGBe)
1f: L-CANAVANINE (GGBf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GGB
6
Ligand/Ion
L-CANAVANINE
2
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:125 , SER A:129 , ASP A:132 , THR A:142 , ILE A:143 , ALA A:144 , HOH A:191 , HOH A:619 , GLY C:145 , ASP C:146 , ASP C:147 , THR C:148 , GLY F:122 , ASP F:146
BINDING SITE FOR RESIDUE GGB A 200
02
AC2
SOFTWARE
VAL A:90 , GLY A:92 , GLY A:93 , THR A:94 , HOH A:238 , ASN B:17 , ARG B:18 , ALA B:19 , SO4 B:172
BINDING SITE FOR RESIDUE SO4 A 171
03
AC3
SOFTWARE
ASN A:17 , ARG A:18 , ALA A:19 , HOH A:251 , HOH A:377 , VAL B:90 , GLY B:92 , GLY B:93 , THR B:94
BINDING SITE FOR RESIDUE SO4 A 172
04
AC4
SOFTWARE
GLY A:145 , ASP A:146 , ASP A:147 , THR A:148 , HIS B:125 , ALA B:128 , SER B:129 , ASP B:132 , THR B:142 , ALA B:144 , HOH B:179 , HOH B:196 , ASP E:146
BINDING SITE FOR RESIDUE GGB B 200
05
AC5
SOFTWARE
LYS B:67 , ARG B:69 , THR B:75 , HOH B:191 , HOH B:239 , ALA F:65 , LYS F:67
BINDING SITE FOR RESIDUE SO4 B 171
06
AC6
SOFTWARE
SER A:91 , GLY A:92 , SO4 A:171 , ALA B:16 , ASN B:17 , GLY B:20 , HOH B:461
BINDING SITE FOR RESIDUE SO4 B 172
07
AC7
SOFTWARE
GLY B:145 , ASP B:146 , ASP B:147 , THR B:148 , HIS C:125 , ALA C:128 , SER C:129 , ASP C:132 , THR C:142 , ILE C:143 , ALA C:144 , HOH C:178 , HOH C:618 , PRO D:121 , GLY D:122 , ASP D:146
BINDING SITE FOR RESIDUE GGB C 200
08
AC8
SOFTWARE
ASN C:17 , ARG C:18 , ALA C:19 , VAL C:90 , GLY C:92 , GLY C:93 , THR C:94 , SO4 C:172 , HOH C:650
BINDING SITE FOR RESIDUE SO4 C 171
09
AC9
SOFTWARE
ALA C:16 , ASN C:17 , ALA C:19 , GLY C:20 , SER C:91 , GLY C:92 , SO4 C:171 , HOH C:650
BINDING SITE FOR RESIDUE SO4 C 172
10
BC1
SOFTWARE
PRO C:121 , GLY C:122 , ASP C:146 , SER D:129 , ASP D:132 , THR D:142 , ILE D:143 , ALA D:144 , HOH D:182 , HOH D:482 , GLY F:145 , ASP F:146 , ASP F:147 , THR F:148
BINDING SITE FOR RESIDUE GGB D 200
11
BC2
SOFTWARE
GLN A:33 , ARG A:35 , ASP D:132 , ALA D:135 , ARG F:118
BINDING SITE FOR RESIDUE SO4 D 171
12
BC3
SOFTWARE
ARG A:35 , GLY A:76 , ALA D:135 , LEU D:136 , PRO D:137 , HOH D:378
BINDING SITE FOR RESIDUE SO4 D 172
13
BC4
SOFTWARE
PRO B:121 , GLY B:122 , ASP B:146 , GLY D:145 , ASP D:146 , ASP D:147 , THR D:148 , HIS E:125 , ALA E:128 , SER E:129 , ASP E:132 , THR E:142 , ILE E:143 , ALA E:144 , HOH E:174 , HOH E:211
BINDING SITE FOR RESIDUE GGB E 200
14
BC5
SOFTWARE
PRO A:121 , GLY A:122 , ASP A:146 , GLY E:145 , ASP E:146 , ASP E:147 , THR E:148 , HIS F:125 , SER F:129 , ASP F:132 , THR F:142 , ILE F:143 , ALA F:144 , HOH F:174 , HOH F:178
BINDING SITE FOR RESIDUE GGB F 200
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SAPs(SNPs)/Variants
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Asymmetric Unit 1
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