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3LAD
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
REFINED CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM AZOTOBACTER VINELANDII AT 2.2 ANGSTROMS RESOLUTION. A COMPARISON WITH THE STRUCTURE OF GLUTATHIONE REDUCTASE
Authors
:
A. Mattevi, A. J. Schierbeek, W. G. J. Hol
Date
:
11 Dec 91 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
A. Mattevi, A. J. Schierbeek, W. G. Hol
Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2. 2 A Resolution. A Comparison With The Structure Of Glutathione Reductase.
J. Mol. Biol. V. 220 975 1991
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:10 , GLY A:12 , PRO A:13 , GLY A:14 , ILE A:32 , GLU A:33 , LYS A:34 , TYR A:35 , GLY A:46 , THR A:47 , CYS A:48 , GLY A:52 , CYS A:53 , SER A:56 , LYS A:57 , GLY A:119 , HIS A:120 , GLY A:121 , ALA A:149 , SER A:150 , GLY A:151 , ILE A:191 , ARG A:278 , LEU A:285 , GLY A:317 , ASP A:318 , LEU A:325 , ALA A:326 , HIS A:327 , TYR A:357 , HOH A:582 , HIS B:450
BINDING SITE FOR RESIDUE FAD A 480
2
AC2
SOFTWARE
HIS A:450 , PRO A:451 , ILE B:9 , GLY B:10 , GLY B:12 , PRO B:13 , GLY B:14 , ILE B:32 , GLU B:33 , LYS B:34 , TYR B:35 , GLY B:46 , THR B:47 , CYS B:48 , GLY B:52 , CYS B:53 , LYS B:57 , GLY B:119 , HIS B:120 , GLY B:121 , ALA B:149 , SER B:150 , GLY B:151 , SER B:152 , ILE B:191 , ARG B:278 , GLY B:317 , ASP B:318 , MET B:324 , LEU B:325 , ALA B:326 , HIS B:327 , HOH B:704
BINDING SITE FOR RESIDUE FAD B 480
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:45-55,B:45-55)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
DLDH_AZOVI
46-56
2
A:45-55
B:45-55
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3lada3 (A:349-472)
1b: SCOP_d3ladb3 (B:349-472)
2a: SCOP_d3lada1 (A:1-158,A:278-348)
2b: SCOP_d3lada2 (A:159-277)
2c: SCOP_d3ladb1 (B:1-158,B:278-348)
2d: SCOP_d3ladb2 (B:159-277)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Dihydrolipoamide dehydrogenase
(10)
Azotobacter vinelandii [TaxId: 354]
(1)
1a
d3lada3
A:349-472
1b
d3ladb3
B:349-472
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Dihydrolipoamide dehydrogenase
(10)
Azotobacter vinelandii [TaxId: 354]
(1)
2a
d3lada1
A:1-158,A:278-348
2b
d3lada2
A:159-277
2c
d3ladb1
B:1-158,B:278-348
2d
d3ladb2
B:159-277
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_3ladA03 (A:351-472)
1b: CATH_3ladB03 (B:351-472)
2a: CATH_3ladA01 (A:1-154,A:277-350)
2b: CATH_3ladB01 (B:1-154,B:277-350)
2c: CATH_3ladA02 (A:155-276)
2d: CATH_3ladB02 (B:155-276)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Azotobacter vinelandii. Organism_taxid: 354
(1)
1a
3ladA03
A:351-472
1b
3ladB03
B:351-472
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Azotobacter vinelandii. Organism_taxid: 354
(1)
2a
3ladA01
A:1-154,A:277-350
2b
3ladB01
B:1-154,B:277-350
2c
3ladA02
A:155-276
2d
3ladB02
B:155-276
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Pfam Domains
(3, 10)
Info
all PFAM domains
1a: PFAM_Pyr_redox_3ladB01 (B:182-265)
1b: PFAM_Pyr_redox_3ladB02 (B:182-265)
2a: PFAM_Pyr_redox_2_3ladB03 (B:283-324)
2b: PFAM_Pyr_redox_2_3ladB04 (B:283-324)
2c: PFAM_Pyr_redox_2_3ladB05 (B:283-324)
2d: PFAM_Pyr_redox_2_3ladB06 (B:283-324)
2e: PFAM_Pyr_redox_2_3ladB07 (B:283-324)
2f: PFAM_Pyr_redox_2_3ladB08 (B:283-324)
3a: PFAM_Pyr_redox_dim_3ladB09 (B:352-461)
3b: PFAM_Pyr_redox_dim_3ladB10 (B:352-461)
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(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Azotobacter vinelandii
(1)
1a
Pyr_redox-3ladB01
B:182-265
1b
Pyr_redox-3ladB02
B:182-265
Family
:
Pyr_redox_2
(69)
Azotobacter vinelandii
(1)
2a
Pyr_redox_2-3ladB03
B:283-324
2b
Pyr_redox_2-3ladB04
B:283-324
2c
Pyr_redox_2-3ladB05
B:283-324
2d
Pyr_redox_2-3ladB06
B:283-324
2e
Pyr_redox_2-3ladB07
B:283-324
2f
Pyr_redox_2-3ladB08
B:283-324
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Azotobacter vinelandii
(1)
3a
Pyr_redox_dim-3ladB09
B:352-461
3b
Pyr_redox_dim-3ladB10
B:352-461
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