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3LA4
Asym. Unit
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Asym.Unit (145 KB)
Biol.Unit 1 (815 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST PLANT UREASE FROM JACK BEAN (CANAVALIA ENSIFORMIS)
Authors
:
K. Ponnuraj
Date
:
06 Jan 10 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Plant Urease, Jack Bean, Canavalia Ensiformis, Hydrolase, Metal- Binding, Nickel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Balasubramanian, K. Ponnuraj
Crystal Structure Of The First Plant Urease From Jack Bean: 83 Years Of Journey From Its First Crystal To Molecular Structure
J. Mol. Biol. V. 400 274 2010
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: ACETONE (ACNa)
2a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
2b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
2c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
3a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
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Label:
No.
Name
Count
Type
Full Name
1
ACN
1
Ligand/Ion
ACETONE
2
CME
3
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
3
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
4
NI
2
Ligand/Ion
NICKEL (II) ION
5
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:407 , HIS A:409 , KCX A:490 , ASP A:633 , NI A:842 , PO4 A:843
BINDING SITE FOR RESIDUE NI A 841
2
AC2
SOFTWARE
KCX A:490 , HIS A:492 , HIS A:519 , HIS A:545 , GLY A:550 , NI A:841 , PO4 A:843
BINDING SITE FOR RESIDUE NI A 842
3
AC3
SOFTWARE
HIS A:407 , HIS A:409 , ALA A:440 , KCX A:490 , HIS A:492 , HIS A:519 , HIS A:545 , GLY A:550 , ASP A:633 , ALA A:636 , NI A:841 , NI A:842 , PO4 A:844
BINDING SITE FOR RESIDUE PO4 A 843
4
AC4
SOFTWARE
HIS A:492 , GLU A:493 , ASP A:494 , HIS A:519 , HIS A:593 , ARG A:609 , PO4 A:843
BINDING SITE FOR RESIDUE PO4 A 844
5
AC5
SOFTWARE
ARG A:222
BINDING SITE FOR RESIDUE ACN A 845
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: UREASE_1 (A:400-413)
2: UREASE_3 (A:402-840)
3: UREASE_2 (A:590-606)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UREASE_1
PS01120
Urease nickel ligands signature.
UREA_CANEN
400-413
1
A:400-413
2
UREASE_3
PS51368
Urease domain profile.
UREA_CANEN
402-840
1
A:402-840
3
UREASE_2
PS00145
Urease active site.
UREA_CANEN
590-606
1
A:590-606
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Amidohydro_1_3la4A01 (A:398-709)
2a: PFAM_Urease_alpha_3la4A02 (A:272-392)
3a: PFAM_Urease_beta_3la4A03 (A:133-232)
4a: PFAM_Urease_gamma_3la4A04 (A:1-100)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Amidohydrolase
(126)
Family
:
Amidohydro_1
(28)
Canavalia ensiformis (Jack bean) (Horse bean)
(1)
1a
Amidohydro_1-3la4A01
A:398-709
Family
:
Urease_alpha
(1)
Canavalia ensiformis (Jack bean) (Horse bean)
(1)
2a
Urease_alpha-3la4A02
A:272-392
Clan
:
no clan defined [family: Urease_beta]
(1)
Family
:
Urease_beta
(1)
Canavalia ensiformis (Jack bean) (Horse bean)
(1)
3a
Urease_beta-3la4A03
A:133-232
Clan
:
no clan defined [family: Urease_gamma]
(1)
Family
:
Urease_gamma
(1)
Canavalia ensiformis (Jack bean) (Horse bean)
(1)
4a
Urease_gamma-3la4A04
A:1-100
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Asymmetric Unit 1
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Asym.Unit (145 KB)
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