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3L9I
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (174 KB)
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(1)
Title
:
MYOSIN VI NUCLEOTIDE-FREE (MDINSERT2) L310G MUTANT CRYSTAL STRUCTURE
Authors
:
O. Pylypenko, L. Song, L. H. Sweeney, A. Houdusse
Date
:
05 Jan 10 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Myosin Vi, Unconventional Myosin, Directionality, Motility, Gating, Actin-Binding, Atp-Binding, Calmodulin-Binding, Endocytosis, Golgi Apparatus, Hearing, Membrane, Motor Protein, Myosin, Nucleotide- Binding, Nucleus, Phosphoprotein, Protein Transport, Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Pylypenko, L. Song, G. Squires, X. Liu, A. B. Zong, A. Houdusse, L. H. Sweeney
Role Of Insert I Of Myosin Vi In Modulating Nucleotide Affinity
To Be Published
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
4a: TERTIARY-BUTYL ALCOHOL (TBUa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CA
4
Ligand/Ion
CALCIUM ION
3
PO4
4
Ligand/Ion
PHOSPHATE ION
4
TBU
1
Ligand/Ion
TERTIARY-BUTYL ALCOHOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:206 , GLY A:207 , LEU A:229 , HOH A:825
BINDING SITE FOR RESIDUE TBU A 7134
02
AC2
SOFTWARE
ASN A:477 , GLN A:481 , PHE A:582 , ARG A:667 , SER A:692 , HOH A:948
BINDING SITE FOR RESIDUE ACT A 1
03
AC3
SOFTWARE
LYS A:78 , VAL A:79 , SER A:82 , HOH A:1456 , HOH A:1548
BINDING SITE FOR RESIDUE PO4 A 816
04
AC4
SOFTWARE
HIS A:213 , SER A:448 , SER A:449 , TYR A:450 , PHE A:451 , HOH A:884 , HOH A:1058 , HOH A:1132 , HOH A:1195
BINDING SITE FOR RESIDUE PO4 A 817
05
AC5
SOFTWARE
ARG A:199 , TYR A:462 , PHE A:463 , GLU A:464 , HOH A:875 , HOH A:1102
BINDING SITE FOR RESIDUE PO4 A 818
06
AC6
SOFTWARE
HIS A:11 , PRO A:12 , THR A:13 , HOH A:849 , HOH A:1289
BINDING SITE FOR RESIDUE PO4 A 819
07
AC7
SOFTWARE
THR A:158 , LYS A:162 , VAL A:183 , LYS A:208
BINDING SITE FOR RESIDUE ACT A 820
08
AC8
SOFTWARE
ASP C:20 , ASP C:22 , ASP C:24 , THR C:26 , GLU C:31 , HOH C:620
BINDING SITE FOR RESIDUE CA C 1148
09
AC9
SOFTWARE
ASP C:56 , ASP C:58 , ASN C:60 , THR C:62 , GLU C:67
BINDING SITE FOR RESIDUE CA C 1149
10
BC1
SOFTWARE
ASP C:129 , ASP C:131 , ASP C:133 , GLN C:135 , ASN C:137 , GLU C:140
BINDING SITE FOR RESIDUE CA C 1151
11
BC2
SOFTWARE
ASP C:93 , ASP C:95 , ASN C:97 , PHE C:99 , GLU C:104
BINDING SITE FOR RESIDUE CA C 1150
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 9)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (C:7-42|C:43-78|C:80-115|C:116-147)
2: EF_HAND_1 (C:20-32|C:56-68|C:93-105|C:129-141)
3: MYOSIN_MOTOR (A:57-771)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM_DROME
8-43
44-79
81-116
117-149
4
C:7-42
C:43-78
C:80-115
C:116-147
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM_DROME
21-33
57-69
94-106
130-142
4
C:20-32
C:56-68
C:93-105
C:129-141
3
MYOSIN_MOTOR
PS51456
Myosin motor domain profile.
MYO6_PIG
57-772
1
A:57-771
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3l9ic_ (C:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(12)
1a
d3l9ic_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_EF_hand_5_3l9iC01 (C:84-145)
1b: PFAM_EF_hand_5_3l9iC02 (C:84-145)
2a: PFAM_Myosin_head_3l9iA01 (A:59-759)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Drosophila melanogaster (Fruit fly)
(4)
1a
EF_hand_5-3l9iC01
C:84-145
1b
EF_hand_5-3l9iC02
C:84-145
Clan
:
P-loop_NTPase
(1112)
Family
:
Myosin_head
(50)
Sus scrofa (Pig)
(4)
2a
Myosin_head-3l9iA01
A:59-759
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Asymmetric Unit 1
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