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3L9H
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
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Title
:
X-RAY STRUCTURE OF MITOTIC KINESIN-5 (KSP, KIF11, EG5)IN COMPLEX WITH THE HEXAHYDRO-2H-PYRANO[3,2-C]QUINOLINE EMD 534085
Authors
:
T. Knoechel
Date
:
05 Jan 10 (Deposition) - 02 Mar 10 (Release) - 02 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Mitotic Spindle Kinesin, Eg5, Small Molecule Inhibitor, Emd 534085, Acetylation, Atp-Binding, Cell Cycle, Cell Division, Coiled Coil, Microtubule, Mitosis, Motor Protein, Nucleotide-Binding, Phosphoprotein, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Schiemann, D. Finsinger, F. Zenke, C. Amendt, T. Knochel, D. Bruge, H. P. Buchstaller, U. Emde, W. Stahle, S. Anzali
The Discovery And Optimization Of Hexahydro-2H-Pyrano[3, 2-C]Quinolines (Hhpqs) As Potent And Selective Inhibitors Of The Mitotic Kinesin-5.
Bioorg. Med. Chem. Lett. V. 20 1491 2010
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: 1-[2-(DIMETHYLAMINO)ETHYL]-3-{[(2R... (EMQa)
2b: 1-[2-(DIMETHYLAMINO)ETHYL]-3-{[(2R... (EMQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
EMQ
2
Ligand/Ion
1-[2-(DIMETHYLAMINO)ETHYL]-3-{[(2R,4AS,5R,10BS)-5-PHENYL-9-(TRIFLUOROMETHYL)-3,4,4A,5,6,10B-HEXAHYDRO-2H-PYRANO[3,2-C]QUINOLIN-2-YL]METHYL}UREA
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:24 , ARG A:26 , PRO A:27 , GLN A:106 , GLY A:108 , THR A:109 , GLY A:110 , LYS A:111 , THR A:112 , PHE A:113 , GLU A:118 , HOH A:379 , HOH A:380 , HOH A:383 , HOH A:393 , HOH A:403 , HOH A:484 , HOH A:497 , HOH A:502
BINDING SITE FOR RESIDUE ADP A 501
2
AC2
SOFTWARE
GLU A:116 , GLU A:118 , ARG A:119 , TRP A:127 , ALA A:133 , PRO A:137 , LEU A:160 , TYR A:211 , LEU A:214 , GLY A:217 , ALA A:218 , ARG A:221 , PHE A:239 , GLU B:215
BINDING SITE FOR RESIDUE EMQ A 601
3
AC3
SOFTWARE
ARG B:24 , ARG B:26 , PRO B:27 , THR B:107 , GLY B:108 , THR B:109 , GLY B:110 , LYS B:111 , THR B:112 , PHE B:113 , GLU B:118 , HOH B:377 , HOH B:379 , HOH B:382 , HOH B:416 , HOH B:441 , HOH B:462 , HOH B:484
BINDING SITE FOR RESIDUE ADP B 502
4
AC4
SOFTWARE
ALA A:219 , GLU B:116 , GLU B:118 , ARG B:119 , TRP B:127 , ALA B:133 , PRO B:137 , LEU B:160 , TYR B:211 , LEU B:214 , GLY B:217 , ALA B:218 , ARG B:221 , HOH B:491
BINDING SITE FOR RESIDUE EMQ B 602
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067829 (F144L, chain A/B, )
2: VAR_067830 (R234C, chain A/B, )
3: VAR_067831 (S235C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067829
F
144
L
KIF11_HUMAN
Disease (MCLMR)
---
A/B
F
144
L
2
UniProt
VAR_067830
R
234
C
KIF11_HUMAN
Disease (MCLMR)
---
A/B
R
234
C
3
UniProt
VAR_067831
S
235
C
KIF11_HUMAN
Disease (MCLMR)
---
A/B
S
235
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:18-359,B:18-359)
2: KINESIN_MOTOR_1 (A:259-270,B:259-270)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF11_HUMAN
18-359
2
A:18-359
B:18-359
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF11_HUMAN
259-270
2
A:259-270
B:259-270
[
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Exons
(9, 18)
Info
All Exons
Exon 1.1 (A:16-26 | B:16-26)
Exon 1.2 (A:26-70 | B:26-70)
Exon 1.3 (A:71-103 | B:71-103)
Exon 1.4 (A:103-129 | B:103-129)
Exon 1.5 (A:130-191 | B:130-191)
Exon 1.6 (A:192-233 | B:192-233)
Exon 1.7 (A:233-263 | B:233-263)
Exon 1.8 (A:264-344 (gaps) | B:264-344 (gaps...)
Exon 1.9 (A:345-362 | B:345-362)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260731
1
ENSE00000986575
chr10:
94353043-94353209
167
KIF11_HUMAN
1-26
26
2
A:16-26
B:16-26
11
11
1.2
ENST00000260731
2
ENSE00001007288
chr10:
94366022-94366154
133
KIF11_HUMAN
26-70
45
2
A:26-70
B:26-70
45
45
1.3
ENST00000260731
3
ENSE00001007283
chr10:
94366376-94366473
98
KIF11_HUMAN
71-103
33
2
A:71-103
B:71-103
33
33
1.4
ENST00000260731
4
ENSE00001007277
chr10:
94366916-94366994
79
KIF11_HUMAN
103-129
27
2
A:103-129
B:103-129
27
27
1.5
ENST00000260731
5
ENSE00001007278
chr10:
94368777-94368962
186
KIF11_HUMAN
130-191
62
2
A:130-191
B:130-191
62
62
1.6
ENST00000260731
6
ENSE00001007286
chr10:
94369142-94369266
125
KIF11_HUMAN
192-233
42
2
A:192-233
B:192-233
42
42
1.7
ENST00000260731
7
ENSE00001007276
chr10:
94372797-94372887
91
KIF11_HUMAN
233-263
31
2
A:233-263
B:233-263
31
31
1.8
ENST00000260731
8
ENSE00001007273
chr10:
94373134-94373376
243
KIF11_HUMAN
264-344
81
2
A:264-344 (gaps)
B:264-344 (gaps)
81
81
1.9
ENST00000260731
9
ENSE00001007274
chr10:
94376494-94376589
96
KIF11_HUMAN
345-376
32
2
A:345-362
B:345-362
18
18
1.10
ENST00000260731
10
ENSE00001007282
chr10:
94381142-94381230
89
KIF11_HUMAN
377-406
30
0
-
-
1.11
ENST00000260731
11
ENSE00001007275
chr10:
94388565-94388652
88
KIF11_HUMAN
406-435
30
0
-
-
1.12
ENST00000260731
12
ENSE00001007285
chr10:
94389933-94390121
189
KIF11_HUMAN
436-498
63
0
-
-
1.13
ENST00000260731
13
ENSE00001007284
chr10:
94392243-94392450
208
KIF11_HUMAN
499-568
70
0
-
-
1.14
ENST00000260731
14
ENSE00001007281
chr10:
94393380-94393552
173
KIF11_HUMAN
568-625
58
0
-
-
1.15
ENST00000260731
15
ENSE00001007287
chr10:
94396941-94397066
126
KIF11_HUMAN
626-667
42
0
-
-
1.16
ENST00000260731
16
ENSE00001007280
chr10:
94397144-94397302
159
KIF11_HUMAN
668-720
53
0
-
-
1.17
ENST00000260731
17
ENSE00001007279
chr10:
94399551-94399657
107
KIF11_HUMAN
721-756
36
0
-
-
1.18
ENST00000260731
18
ENSE00000986592
chr10:
94405120-94405399
280
KIF11_HUMAN
756-849
94
0
-
-
1.19
ENST00000260731
19
ENSE00000932880
chr10:
94407969-94408191
223
KIF11_HUMAN
850-924
75
0
-
-
1.20
ENST00000260731
20
ENSE00000986593
chr10:
94409592-94409743
152
KIF11_HUMAN
924-974
51
0
-
-
1.21
ENST00000260731
21
ENSE00000986594
chr10:
94410158-94410274
117
KIF11_HUMAN
975-1013
39
0
-
-
1.22
ENST00000260731
22
ENSE00000986595
chr10:
94413422-94415150
1729
KIF11_HUMAN
1014-1056
43
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3l9ha_ (A:)
1b: SCOP_d3l9hb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Motor proteins
(119)
Protein domain
:
automated matches
(40)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3l9ha_
A:
1b
d3l9hb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3l9hA00 (A:16-362)
1b: CATH_3l9hB00 (B:16-362)
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(
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Kinesin
(69)
Homologous Superfamily
:
Kinesin
(69)
Human (Homo sapiens)
(36)
1a
3l9hA00
A:16-362
1b
3l9hB00
B:16-362
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Kinesin_3l9hB01 (B:24-359)
1b: PFAM_Kinesin_3l9hB02 (B:24-359)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Kinesin
(42)
Homo sapiens (Human)
(23)
1a
Kinesin-3l9hB01
B:24-359
1b
Kinesin-3l9hB02
B:24-359
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