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3L94
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (196 KB)
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(1)
Title
:
STRUCTURE OF PVDQ COVALENTLY ACYLATED WITH MYRISTATE
Authors
:
E. J. Drake, A. M. Gulick
Date
:
04 Jan 10 (Deposition) - 26 Jan 11 (Release) - 17 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Pvdq, Pyoverdine, Acylase, Ntn Hydrolase, Hydrolase, Quorum Sensing, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Drake, A. M. Gulick
Structural Characterization And High-Throughput Screening O Inhibitors Of Pvdq, An Ntn Hydrolase Involved In Pyoverdine Synthesis.
Acs Chem. Biol. V. 6 1277 2011
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: MYRISTIC ACID (MYRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
MYR
1
Ligand/Ion
MYRISTIC ACID
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:70 , VAL A:74 , TRP A:153 , ARG A:155 , HOH A:247
BINDING SITE FOR RESIDUE EDO A 901
02
AC2
SOFTWARE
ARG A:77 , GLU A:79 , HOH A:212
BINDING SITE FOR RESIDUE EDO A 902
03
AC3
SOFTWARE
GLU A:172 , TRP B:402
BINDING SITE FOR RESIDUE EDO A 904
04
AC4
SOFTWARE
LEU A:97 , VAL A:183 , HOH A:309 , GLY B:257 , HIS B:337
BINDING SITE FOR RESIDUE EDO A 907
05
AC5
SOFTWARE
ARG A:36 , ARG A:46 , ALA A:186 , PRO A:187 , ARG B:757
BINDING SITE FOR RESIDUE EDO A 910
06
AC6
SOFTWARE
ARG A:46 , ALA A:47 , ALA A:184 , HOH A:272 , HOH B:188 , PRO B:256 , PRO B:351
BINDING SITE FOR RESIDUE EDO A 914
07
AC7
SOFTWARE
LYS A:48 , GLU A:93 , LEU A:94 , ASP A:95 , ASP A:180
BINDING SITE FOR RESIDUE EDO A 915
08
AC8
SOFTWARE
THR A:166 , LEU A:169 , SER B:217 , PHE B:240 , THR B:285 , VAL B:286 , TRP B:378 , ASN B:485 , HOH B:871
BINDING SITE FOR RESIDUE MYR B 800
09
AC9
SOFTWARE
HOH A:3 , TYR A:40 , GLN B:250 , GLN B:730 , THR B:741 , LEU B:742 , PRO B:743
BINDING SITE FOR RESIDUE EDO B 900
10
BC1
SOFTWARE
SER A:91 , ARG A:168 , PRO B:241 , ASN B:243 , GLY B:244 , ALA B:245 , MET B:246
BINDING SITE FOR RESIDUE EDO B 903
11
BC2
SOFTWARE
HOH B:155 , LYS B:302 , LEU B:308 , GLY B:311 , ASP B:729 , GLU B:732
BINDING SITE FOR RESIDUE EDO B 905
12
BC3
SOFTWARE
HOH B:206 , THR B:254 , PRO B:256 , GLY B:257 , ASP B:260
BINDING SITE FOR RESIDUE EDO B 906
13
BC4
SOFTWARE
ARG B:278 , GLU B:410 , PHE B:703 , PRO B:704 , GLY B:707 , PRO B:708
BINDING SITE FOR RESIDUE EDO B 908
14
BC5
SOFTWARE
HOH B:141 , HOH B:143 , PRO B:704 , GLY B:707 , LYS B:709
BINDING SITE FOR RESIDUE EDO B 909
15
BC6
SOFTWARE
HOH B:170 , ARG B:373 , ALA B:462 , HOH B:796
BINDING SITE FOR RESIDUE EDO B 911
16
BC7
SOFTWARE
ARG B:365 , TRP B:455 , ALA B:464 , GLY B:465
BINDING SITE FOR RESIDUE EDO B 912
17
BC8
SOFTWARE
PHE B:596 , ALA B:597 , LEU B:599 , GLY B:601 , ALA B:602 , TRP B:603
BINDING SITE FOR RESIDUE EDO B 913
18
BC9
SOFTWARE
ALA A:111 , ARG A:167 , LEU B:369 , GLU B:370
BINDING SITE FOR RESIDUE EDO B 916
19
CC1
SOFTWARE
ASP B:581 , ARG B:651 , GLY B:653 , ASP B:654
BINDING SITE FOR RESIDUE EDO B 917
20
CC2
SOFTWARE
HOH B:194 , ARG B:513 , GLY B:672 , HIS B:673 , HOH B:807
BINDING SITE FOR RESIDUE EDO B 918
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Penicil_amidase_3l94B01 (B:217-755)
1b: PFAM_Penicil_amidase_3l94B02 (B:217-755)
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)
(
)
Clan
:
NTN
(93)
Family
:
Penicil_amidase
(19)
Pseudomonas aeruginosa
(5)
1a
Penicil_amidase-3l94B01
B:217-755
1b
Penicil_amidase-3l94B02
B:217-755
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Asymmetric Unit 1
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