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3L8Q
Biol. Unit 3
Info
Asym.Unit (527 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (135 KB)
Biol.Unit 3 (133 KB)
Biol.Unit 4 (134 KB)
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(1)
Title
:
STRUCTURE ANALYSIS OF THE TYPE II COHESIN DYAD FROM THE ADAPTOR SCAA SCAFFOLDIN OF ACETIVIBRIO CELLULOLYTICUS
Authors
:
I. Noach, F. Frolow, E. A. Bayer
Date
:
03 Jan 10 (Deposition) - 05 May 10 (Release) - 02 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.57
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Dockerin-Binding Module, Protein-Protein Interactions, Linker Segment, Scaffoldin Arrangement, Beta Sandwich, Alpha Helix, Beta Flaps, Structural Protein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Noach, M. Levy-Assaraf, R. Lamed, L. J. W. Shimon, F. Frolow, E. A. Bayer
Modular Arrangement Of A Cellulosomal Scaffoldin Subunit Revealed From The Crystal Structure Of A Cohesin Dyad
J. Mol. Biol. V. 399 294 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: HEXANE-1,6-DIOL (HEZa)
3a: 1,3-PROPANDIOL (PDOa)
3b: 1,3-PROPANDIOL (PDOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
HEZ
-1
Ligand/Ion
HEXANE-1,6-DIOL
3
PDO
1
Ligand/Ion
1,3-PROPANDIOL
[
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Sites
(12, 12)
Info
All Sites
01: AC8 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC8 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC3 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
THR A:125 , ASP A:168 , LYS A:171 , ALA A:172 , PHE A:328 , HOH A:384 , HOH A:520 , VAL C:186 , GLY C:187 , HOH C:503 , HOH C:798
BINDING SITE FOR RESIDUE EDO A 359
02
BC2
SOFTWARE
GLN B:249 , VAL B:251 , ASN B:260 , LEU B:261 , SER B:262 , HOH C:910
BINDING SITE FOR RESIDUE EDO B 353
03
BC4
SOFTWARE
THR B:14 , LEU B:167 , MET B:169 , HOH B:511 , HOH C:633
BINDING SITE FOR RESIDUE EDO B 355
04
BC6
SOFTWARE
GLU C:8 , ILE C:9 , PRO C:162 , ALA C:163 , HOH C:364 , HOH C:885
BINDING SITE FOR RESIDUE EDO C 351
05
BC7
SOFTWARE
ILE B:247 , THR B:266 , HOH B:482 , GLN C:206 , SER C:262 , PHE C:316 , EDO C:355 , HOH C:425 , HOH C:1946
BINDING SITE FOR RESIDUE EDO C 352
06
BC8
SOFTWARE
ALA C:46 , GLU C:85 , HOH C:1831
BINDING SITE FOR RESIDUE EDO C 353
07
BC9
SOFTWARE
ASP C:73
BINDING SITE FOR RESIDUE EDO C 354
08
CC1
SOFTWARE
HOH B:482 , GLN C:249 , VAL C:251 , ASN C:260 , LEU C:261 , SER C:262 , EDO C:352 , HOH C:1115 , HOH C:2093
BINDING SITE FOR RESIDUE EDO C 355
09
CC2
SOFTWARE
PRO C:3 , SER C:158 , THR C:297
BINDING SITE FOR RESIDUE EDO C 356
10
CC3
SOFTWARE
ASN C:208 , GLU C:301 , ASP C:302 , GLU C:304 , HOH C:2095
BINDING SITE FOR RESIDUE EDO C 357
11
CC4
SOFTWARE
HOH A:832 , PRO C:107 , GLN C:109 , THR C:110 , HOH C:658 , HOH C:1060 , HOH C:2077
BINDING SITE FOR RESIDUE EDO C 358
12
CC5
SOFTWARE
LYS C:42 , TYR C:43 , SER C:127 , SER C:129 , GLU C:131
BINDING SITE FOR RESIDUE PDO C 359
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3l8qa1 (A:1-172)
1b: SCOP_d3l8qa2 (A:173-338)
1c: SCOP_d3l8qb1 (B:1-172)
1d: SCOP_d3l8qb2 (B:173-341)
1e: SCOP_d3l8qc1 (C:3-172)
1f: SCOP_d3l8qc2 (C:173-337)
1g: SCOP_d3l8qd1 (D:4-172)
1h: SCOP_d3l8qd2 (D:173-340)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Cellulosomal scaffoldin adaptor protein B, ScaB
(6)
Acetivibrio cellulolyticus [TaxId: 35830]
(6)
1a
d3l8qa1
A:1-172
1b
d3l8qa2
A:173-338
1c
d3l8qb1
B:1-172
1d
d3l8qb2
B:173-341
1e
d3l8qc1
C:3-172
1f
d3l8qc2
C:173-337
1g
d3l8qd1
D:4-172
1h
d3l8qd2
D:173-340
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Cohesin_3l8qD01 (D:175-336)
1b: PFAM_Cohesin_3l8qD02 (D:175-336)
1c: PFAM_Cohesin_3l8qD03 (D:175-336)
1d: PFAM_Cohesin_3l8qD04 (D:175-336)
1e: PFAM_Cohesin_3l8qD05 (D:175-336)
1f: PFAM_Cohesin_3l8qD06 (D:175-336)
1g: PFAM_Cohesin_3l8qD07 (D:175-336)
1h: PFAM_Cohesin_3l8qD08 (D:175-336)
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(
)
Organisms
(
)
(
)
Clan
:
CBD
(21)
Family
:
Cohesin
(6)
Acetivibrio cellulolyticus
(2)
1a
Cohesin-3l8qD01
D:175-336
1b
Cohesin-3l8qD02
D:175-336
1c
Cohesin-3l8qD03
D:175-336
1d
Cohesin-3l8qD04
D:175-336
1e
Cohesin-3l8qD05
D:175-336
1f
Cohesin-3l8qD06
D:175-336
1g
Cohesin-3l8qD07
D:175-336
1h
Cohesin-3l8qD08
D:175-336
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (527 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
Biol.Unit 3 (133 KB)
Header - Biol.Unit 3
Biol.Unit 4 (134 KB)
Header - Biol.Unit 4
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