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3L8Q
Biol. Unit 1
Info
Asym.Unit (527 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (135 KB)
Biol.Unit 3 (133 KB)
Biol.Unit 4 (134 KB)
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(1)
Title
:
STRUCTURE ANALYSIS OF THE TYPE II COHESIN DYAD FROM THE ADAPTOR SCAA SCAFFOLDIN OF ACETIVIBRIO CELLULOLYTICUS
Authors
:
I. Noach, F. Frolow, E. A. Bayer
Date
:
03 Jan 10 (Deposition) - 05 May 10 (Release) - 02 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.57
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Dockerin-Binding Module, Protein-Protein Interactions, Linker Segment, Scaffoldin Arrangement, Beta Sandwich, Alpha Helix, Beta Flaps, Structural Protein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Noach, M. Levy-Assaraf, R. Lamed, L. J. W. Shimon, F. Frolow, E. A. Bayer
Modular Arrangement Of A Cellulosomal Scaffoldin Subunit Revealed From The Crystal Structure Of A Cohesin Dyad
J. Mol. Biol. V. 399 294 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: HEXANE-1,6-DIOL (HEZa)
3a: 1,3-PROPANDIOL (PDOa)
3b: 1,3-PROPANDIOL (PDOb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
HEZ
-1
Ligand/Ion
HEXANE-1,6-DIOL
3
PDO
1
Ligand/Ion
1,3-PROPANDIOL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:97 , LEU A:98 , ASP A:99 , ASP A:100 , HOH A:1300 , HOH A:1675
BINDING SITE FOR RESIDUE EDO A 351
2
AC2
SOFTWARE
LYS A:42 , TYR A:43 , ASP A:44 , SER A:127 , HOH A:431
BINDING SITE FOR RESIDUE EDO A 352
3
AC3
SOFTWARE
GLU A:8 , ILE A:9 , ILE A:160 , PRO A:162 , ALA A:163 , HOH A:1139
BINDING SITE FOR RESIDUE EDO A 353
4
AC4
SOFTWARE
GLN A:249 , ASN A:260 , LEU A:261 , SER A:262 , HOH A:770 , HOH A:1261
BINDING SITE FOR RESIDUE EDO A 354
5
AC5
SOFTWARE
ALA A:57 , TYR A:58 , THR A:59 , LEU A:84 , HOH A:430
BINDING SITE FOR RESIDUE EDO A 355
6
AC6
SOFTWARE
ASN A:30 , THR A:32 , ILE A:153 , SER A:155 , HOH A:676 , HOH A:744
BINDING SITE FOR RESIDUE EDO A 356
7
AC7
SOFTWARE
ASP A:81 , ASN A:82 , ASP A:83
BINDING SITE FOR RESIDUE PDO A 357
8
AC8
SOFTWARE
THR A:125 , ASP A:168 , LYS A:171 , ALA A:172 , PHE A:328 , HOH A:384 , HOH A:520 , VAL C:186 , GLY C:187 , HOH C:503 , HOH C:798
BINDING SITE FOR RESIDUE EDO A 359
9
CC4
SOFTWARE
HOH A:832 , PRO C:107 , GLN C:109 , THR C:110 , HOH C:658 , HOH C:1060 , HOH C:2077
BINDING SITE FOR RESIDUE EDO C 358
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3l8qa1 (A:1-172)
1b: SCOP_d3l8qa2 (A:173-338)
1c: SCOP_d3l8qb1 (B:1-172)
1d: SCOP_d3l8qb2 (B:173-341)
1e: SCOP_d3l8qc1 (C:3-172)
1f: SCOP_d3l8qc2 (C:173-337)
1g: SCOP_d3l8qd1 (D:4-172)
1h: SCOP_d3l8qd2 (D:173-340)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Cellulosomal scaffoldin adaptor protein B, ScaB
(6)
Acetivibrio cellulolyticus [TaxId: 35830]
(6)
1a
d3l8qa1
A:1-172
1b
d3l8qa2
A:173-338
1c
d3l8qb1
B:1-172
1d
d3l8qb2
B:173-341
1e
d3l8qc1
C:3-172
1f
d3l8qc2
C:173-337
1g
d3l8qd1
D:4-172
1h
d3l8qd2
D:173-340
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Cohesin_3l8qD01 (D:175-336)
1b: PFAM_Cohesin_3l8qD02 (D:175-336)
1c: PFAM_Cohesin_3l8qD03 (D:175-336)
1d: PFAM_Cohesin_3l8qD04 (D:175-336)
1e: PFAM_Cohesin_3l8qD05 (D:175-336)
1f: PFAM_Cohesin_3l8qD06 (D:175-336)
1g: PFAM_Cohesin_3l8qD07 (D:175-336)
1h: PFAM_Cohesin_3l8qD08 (D:175-336)
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(
)
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(
)
(
)
Clan
:
CBD
(21)
Family
:
Cohesin
(6)
Acetivibrio cellulolyticus
(2)
1a
Cohesin-3l8qD01
D:175-336
1b
Cohesin-3l8qD02
D:175-336
1c
Cohesin-3l8qD03
D:175-336
1d
Cohesin-3l8qD04
D:175-336
1e
Cohesin-3l8qD05
D:175-336
1f
Cohesin-3l8qD06
D:175-336
1g
Cohesin-3l8qD07
D:175-336
1h
Cohesin-3l8qD08
D:175-336
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Show PDB file:
Asym.Unit (527 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
Biol.Unit 3 (133 KB)
Header - Biol.Unit 3
Biol.Unit 4 (134 KB)
Header - Biol.Unit 4
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