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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'Exon' information from database.
3L7U
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN NM23-H1
Authors
:
B. G. Han, K. Min, B. I. Lee, S. Lee
Date
:
29 Dec 09 (Deposition) - 10 Nov 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Kinase, Atp-Binding, Nucleotide-Binding, Transferase, Tumor Suppressor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. G. Han, K. Min, B. I. Lee, S. Lee
Refined Structure Of Human Nm23-H1 From A Hexagonal Crystal
Bull. Korean Chem. Soc. V. 31 1397 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
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Label:
No.
Name
Count
Type
Full Name
1
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:88 , THR B:94 , HIS B:118 , HOH B:328 , HOH B:366
BINDING SITE FOR RESIDUE PO4 B 153
2
AC2
SOFTWARE
CYS A:145 , ALA A:146 , ARG B:18 , HOH B:174 , HOH B:245 , HOH B:374 , GLN C:17 , ARG C:18 , HOH C:196 , HOH C:290 , HOH C:345
BINDING SITE FOR RESIDUE PO4 B 154
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004625 (S120G, chain A/B/C, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004625
S
120
G
NDKA_HUMAN
Polymorphism
121917887
A/B/C
S
120
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: NDP_KINASES (A:115-123,B:115-123,C:115-123)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NDP_KINASES
PS00469
Nucleoside diphosphate kinases active site.
NDKA_HUMAN
115-123
3
A:115-123
B:115-123
C:115-123
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Exons
(4, 12)
Info
All Exons
Exon 1.4b (A:1-42 | B:1-42 | C:1-42)
Exon 1.5a (A:43-76 | B:43-76 | C:43-76)
Exon 1.6c (A:77-114 | B:77-114 | C:77-114)
Exon 1.6i (A:114-152 | B:114-152 | C:114-152)
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All Exon Boundaries
1: Boundary 1.1a/1.4b
2: Boundary 1.4b/1.5a
3: Boundary 1.5a/1.6c
4: Boundary 1.6c/1.6i
5: Boundary 1.6i/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000393196
1a
ENSE00001874573
chr17:
49230897-49231023
127
NDKA_HUMAN
-
0
0
-
-
1.4b
ENST00000393196
4b
ENSE00002182518
chr17:
49233012-49233141
130
NDKA_HUMAN
1-42
42
3
A:1-42
B:1-42
C:1-42
42
42
42
1.5a
ENST00000393196
5a
ENSE00002174061
chr17:
49237341-49237442
102
NDKA_HUMAN
43-76
34
3
A:43-76
B:43-76
C:43-76
34
34
34
1.6c
ENST00000393196
6c
ENSE00002147222
chr17:
49238521-49238633
113
NDKA_HUMAN
77-114
38
3
A:77-114
B:77-114
C:77-114
38
38
38
1.6i
ENST00000393196
6i
ENSE00001956093
chr17:
49239089-49239556
468
NDKA_HUMAN
114-152
39
3
A:114-152
B:114-152
C:114-152
39
39
39
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3l7ua_ (A:)
1b: SCOP_d3l7ub_ (B:)
1c: SCOP_d3l7uc_ (C:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Nucleoside diphosphate kinase, NDK
(129)
Family
:
Nucleoside diphosphate kinase, NDK
(112)
Protein domain
:
Nucleoside diphosphate kinase, NDK
(66)
Human (Homo sapiens), NDKA [TaxId: 9606]
(6)
1a
d3l7ua_
A:
1b
d3l7ub_
B:
1c
d3l7uc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_NDK_3l7uC01 (C:5-139)
1b: PFAM_NDK_3l7uC02 (C:5-139)
1c: PFAM_NDK_3l7uC03 (C:5-139)
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Clan
:
no clan defined [family: NDK]
(40)
Family
:
NDK
(40)
Homo sapiens (Human)
(6)
1a
NDK-3l7uC01
C:5-139
1b
NDK-3l7uC02
C:5-139
1c
NDK-3l7uC03
C:5-139
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