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3L7G
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (214 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (144 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ORGANOPHOSPHATE ANHYDROLASE/PROLIDASE
Authors
:
N. K. Vyas, A. Nickitenko, F. A. Quiocho
Date
:
28 Dec 09 (Deposition) - 09 Feb 10 (Release) - 09 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A (2x)
Biol. Unit 3: B,C (1x)
Keywords
:
Pita-Bread, Detoxification, Dipeptidase, Hydrolase, Manganese, Metal-Binding, Metalloprotease, Protease
(Keyword Search:
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Reference
:
N. K. Vyas, A. Nickitenko, V. K. Rastogi, S. S. Shah, F. A. Quiocho
Structural Insights Into The Dual Activities Of The Nerve Agent Degrading Organophosphate Anhydrolase/Prolidase.
Biochemistry V. 49 547 2010
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: N,N'-BIS(1-METHYLETHYL)PHOSPHORODI... (M44a)
1b: N,N'-BIS(1-METHYLETHYL)PHOSPHORODI... (M44b)
1c: N,N'-BIS(1-METHYLETHYL)PHOSPHORODI... (M44c)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
View:
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Label:
No.
Name
Count
Type
Full Name
1
M44
3
Ligand/Ion
N,N'-BIS(1-METHYLETHYL)PHOSPHORODIAMIDIC ACID
2
MN
11
Ligand/Ion
MANGANESE (II) ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:212 , ASP A:244 , ASP A:255 , HIS A:332 , HIS A:343 , GLU A:381 , ARG A:418 , GLU A:420 , MN A:519 , MN A:520
BINDING SITE FOR RESIDUE M44 A 518
02
AC2
SOFTWARE
ASP A:255 , HIS A:336 , GLU A:381 , GLU A:420 , M44 A:518 , MN A:520
BINDING SITE FOR RESIDUE MN A 519
03
AC3
SOFTWARE
ASP A:244 , ASP A:255 , THR A:257 , GLU A:420 , M44 A:518 , MN A:519
BINDING SITE FOR RESIDUE MN A 520
04
AC4
SOFTWARE
HIS A:90 , HIS A:226
BINDING SITE FOR RESIDUE MN A 521
05
AC5
SOFTWARE
ASP A:105 , GLU A:107
BINDING SITE FOR RESIDUE MN A 522
06
AC6
SOFTWARE
TYR B:212 , LEU B:225 , ASP B:244 , ASP B:255 , HIS B:332 , HIS B:343 , GLU B:381 , ARG B:418 , GLU B:420 , MN B:519 , MN B:520
BINDING SITE FOR RESIDUE M44 B 518
07
AC7
SOFTWARE
ASP B:255 , HIS B:336 , GLU B:381 , GLU B:420 , M44 B:518 , MN B:520
BINDING SITE FOR RESIDUE MN B 519
08
AC8
SOFTWARE
TYR B:212 , ASP B:244 , ASP B:255 , THR B:257 , GLU B:420 , M44 B:518 , MN B:519
BINDING SITE FOR RESIDUE MN B 520
09
AC9
SOFTWARE
GLU B:26 , GLU C:431 , GLU C:436 , HOH C:636
BINDING SITE FOR RESIDUE MN B 521
10
BC1
SOFTWARE
HIS B:226 , HIS C:90
BINDING SITE FOR RESIDUE MN B 522
11
BC2
SOFTWARE
TYR C:212 , LEU C:225 , ASP C:244 , ASP C:255 , HIS C:343 , GLU C:381 , ARG C:418 , GLU C:420 , MN C:519 , MN C:520
BINDING SITE FOR RESIDUE M44 C 518
12
BC3
SOFTWARE
ASP C:255 , HIS C:336 , GLU C:381 , GLU C:420 , M44 C:518 , MN C:520
BINDING SITE FOR RESIDUE MN C 519
13
BC4
SOFTWARE
ASP C:244 , ASP C:255 , THR C:257 , GLU C:420 , M44 C:518 , MN C:519
BINDING SITE FOR RESIDUE MN C 520
14
BC5
SOFTWARE
HIS B:90 , HIS C:226
BINDING SITE FOR RESIDUE MN C 521
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: PROLINE_PEPTIDASE (A:332-344,B:332-344,C:332-344)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROLINE_PEPTIDASE
PS00491
Aminopeptidase P and proline dipeptidase signature.
PEPQ_ALTSX
332-344
3
A:332-344
B:332-344
C:332-344
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Peptidase_M24_3l7gC01 (C:166-427)
1b: PFAM_Peptidase_M24_3l7gC02 (C:166-427)
1c: PFAM_Peptidase_M24_3l7gC03 (C:166-427)
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Clan
:
no clan defined [family: Peptidase_M24]
(23)
Family
:
Peptidase_M24
(23)
Alteromonas sp
(2)
1a
Peptidase_M24-3l7gC01
C:166-427
1b
Peptidase_M24-3l7gC02
C:166-427
1c
Peptidase_M24-3l7gC03
C:166-427
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Asymmetric Unit 1
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Asym.Unit (222 KB)
Header - Asym.Unit
Biol.Unit 1 (214 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
Biol.Unit 3 (144 KB)
Header - Biol.Unit 3
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