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3L6T
Asym. Unit
Info
Asym.Unit (176 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN N-TERMINAL MUTANT OF THE PLASMID PCU1 TRAI RELAXASE DOMAIN
Authors
:
M. R. Redinbo, R. P. Nash
Date
:
24 Dec 09 (Deposition) - 19 May 10 (Release) - 06 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Trwc Superfamily Of Relaxase Enzymes, Conjugative Relaxase, Mob Class Relaxase, Conjugal Nickase, Hydrolase, Histidine Triad, Huh+H Motif
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. P. Nash, S. Habibi, Y. Cheng, S. A. Lujan, M. R. Redinbo
The Mechanism And Control Of Dna Transfer By The Conjugativ Relaxase Of Resistance Plasmid Pcu1.
Nucleic Acids Res. V. 38 5929 2010
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close entry info
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Hetero Components
(7, 31)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
4a: MAGNESIUM ION (MGa)
5a: SODIUM ION (NAa)
6a: NICKEL (II) ION (NIa)
6b: NICKEL (II) ION (NIb)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
CL
3
Ligand/Ion
CHLORIDE ION
3
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NA
1
Ligand/Ion
SODIUM ION
6
NI
2
Ligand/Ion
NICKEL (II) ION
7
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:-2 , VAL A:16 , HIS A:149 , HIS A:160 , HIS A:162 , EDO A:301 , EDO A:306 , NI A:314 , HOH A:360 , HOH A:381 , HOH A:463 , THR B:129 , GLN B:131 , GLY B:132
BINDING SITE FOR RESIDUE CIT A 300
02
AC2
SOFTWARE
ASP A:84 , THR A:86 , HIS A:162 , CIT A:300 , HOH A:386 , HOH A:460 , HOH A:537
BINDING SITE FOR RESIDUE EDO A 301
03
AC3
SOFTWARE
ARG A:186 , ASN A:187 , LYS A:188 , MET A:189 , HIS A:190 , HOH A:376 , HOH A:539 , LEU B:201 , EDO B:305 , HOH B:331
BINDING SITE FOR RESIDUE EDO A 302
04
AC4
SOFTWARE
SER A:31 , SER A:32 , THR A:34 , SER A:35 , GLY A:48 , ASP A:49
BINDING SITE FOR RESIDUE EDO A 303
05
AC5
SOFTWARE
MET A:69 , GLN A:70 , ARG A:177 , ALA A:178 , HOH A:517
BINDING SITE FOR RESIDUE EDO A 304
06
AC6
SOFTWARE
THR A:104 , GLU A:107 , ALA A:108 , LYS A:111 , GLU A:202 , HOH A:406 , HOH A:476
BINDING SITE FOR RESIDUE EDO A 305
07
AC7
SOFTWARE
VAL A:16 , CIT A:300 , EDO A:308 , ARG B:130 , GLN B:131
BINDING SITE FOR RESIDUE EDO A 306
08
AC8
SOFTWARE
GLY A:38 , THR A:39 , ARG A:118 , GLU A:121 , HOH A:403 , HOH A:419 , HOH A:526
BINDING SITE FOR RESIDUE EDO A 307
09
AC9
SOFTWARE
VAL A:16 , GLY A:17 , TYR A:27 , HIS A:149 , EDO A:306 , HOH A:411 , HOH A:520 , GLN B:131
BINDING SITE FOR RESIDUE EDO A 308
10
BC1
SOFTWARE
LYS A:56 , HOH A:359 , HOH A:369
BINDING SITE FOR RESIDUE EDO A 309
11
BC2
SOFTWARE
ARG A:80 , ARG A:127 , ASN A:181 , ASP A:182 , CL A:315 , HOH A:333 , HOH A:334
BINDING SITE FOR RESIDUE EDO A 310
12
BC3
SOFTWARE
THR A:65 , HOH A:503
BINDING SITE FOR RESIDUE EDO A 311
13
BC4
SOFTWARE
ARG A:9 , TYR A:18 , VAL A:60 , HOH A:427
BINDING SITE FOR RESIDUE EDO A 312
14
BC5
SOFTWARE
TYR A:212 , ASN A:213 , SER A:214 , ASN A:217 , THR A:218 , LYS B:188
BINDING SITE FOR RESIDUE EDO A 313
15
BC6
SOFTWARE
HIS A:149 , HIS A:160 , HIS A:162 , CIT A:300
BINDING SITE FOR RESIDUE NI A 314
16
BC7
SOFTWARE
LEU A:179 , ASN A:181 , EDO A:310
BINDING SITE FOR RESIDUE CL A 315
17
BC8
SOFTWARE
LYS A:111 , ARG A:118
BINDING SITE FOR RESIDUE CL A 316
18
BC9
SOFTWARE
VAL A:16
BINDING SITE FOR RESIDUE CL A 317
19
CC1
SOFTWARE
ARG A:171 , ARG A:177 , HOH A:332
BINDING SITE FOR RESIDUE PO4 A 318
20
CC2
SOFTWARE
MET A:1 , PRO A:90 , THR A:218 , PHE A:219 , NA A:321 , HOH A:375 , HOH A:429 , LYS B:215 , ASN B:216
BINDING SITE FOR RESIDUE PO4 A 319
21
CC3
SOFTWARE
SER A:32 , PHE A:33 , GLU A:110 , THR A:146 , ARG A:148 , HOH A:396
BINDING SITE FOR RESIDUE MG A 320
22
CC4
SOFTWARE
LYS A:91 , PO4 A:319
BINDING SITE FOR RESIDUE NA A 321
23
CC5
SOFTWARE
HOH A:495 , ARG B:186 , ASN B:187 , LYS B:188 , MET B:189 , HIS B:190 , EDO B:301 , HOH B:396
BINDING SITE FOR RESIDUE EDO B 300
24
CC6
SOFTWARE
MET B:185 , ARG B:186 , LYS B:188 , MET B:189 , EDO B:300
BINDING SITE FOR RESIDUE EDO B 301
25
CC7
SOFTWARE
HIS B:160 , HIS B:162 , NI B:308 , HOH B:323 , HOH B:435
BINDING SITE FOR RESIDUE EDO B 302
26
CC8
SOFTWARE
ALA B:126 , ARG B:127 , ALA B:178
BINDING SITE FOR RESIDUE EDO B 303
27
CC9
SOFTWARE
THR B:67 , GLY B:174 , GLN B:175 , TRP B:176
BINDING SITE FOR RESIDUE EDO B 304
28
DC1
SOFTWARE
EDO A:302 , HOH A:345 , VAL B:194 , GLN B:197 , GLU B:198 , HOH B:367
BINDING SITE FOR RESIDUE EDO B 305
29
DC2
SOFTWARE
LYS A:215 , HOH A:351 , PHE B:219 , HOH B:314 , HOH B:342 , HOH B:345 , HOH B:347 , HOH B:348
BINDING SITE FOR RESIDUE EDO B 306
30
DC3
SOFTWARE
VAL B:15 , ASP B:84 , PHE B:147 , PHE B:164
BINDING SITE FOR RESIDUE EDO B 307
31
DC4
SOFTWARE
HIS B:149 , HIS B:160 , HIS B:162 , EDO B:302 , HOH B:323
BINDING SITE FOR RESIDUE NI B 308
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3l6ta_ (A:)
1b: SCOP_d3l6tb_ (B:)
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Classes
(
)
(
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(
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Origin of replication-binding domain, RBD-like
(33)
Superfamily
:
Origin of replication-binding domain, RBD-like
(33)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Escherichia coli [TaxId: 562]
(2)
1a
d3l6ta_
A:
1b
d3l6tb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TrwC_3l6tB01 (B:8-223)
1b: PFAM_TrwC_3l6tB02 (B:8-223)
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Clans
(
)
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: TrwC]
(9)
Family
:
TrwC
(9)
Escherichia coli
(6)
1a
TrwC-3l6tB01
B:8-223
1b
TrwC-3l6tB02
B:8-223
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