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3L4G
Biol. Unit 2
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (335 KB)
Biol.Unit 2 (303 KB)
Biol.Unit 3 (307 KB)
Biol.Unit 4 (302 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HOMO SAPIENS CYTOPLASMIC PHENYLALANYL-TRNA SYNTHETASE
Authors
:
I. Finarov, N. Moor, N. Kessler, L. Klipcan, M. G. Safro
Date
:
20 Dec 09 (Deposition) - 09 Mar 10 (Release) - 05 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Aminoacylation, Trna-Binding, Dna-Binding Domain, Four-Helix Bundle, Acetylation, Aminoacyl-Trna Synthetase, Atp-Binding, Cytoplasm, Ligase, Nucleotide-Binding, Phosphoprotein, Polymorphism, Protein Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Finarov, N. Moor, N. Kessler, L. Klipcan, M. G. Safro
Structure Of Human Cytosolic Phenylalanyl-Trna Synthetase: Evidence For Kingdom-Specific Design Of The Active Sites And Trna Binding Patterns.
Structure V. 18 343 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHENYLALANINE (PHEa)
1b: PHENYLALANINE (PHEb)
1c: PHENYLALANINE (PHEc)
1d: PHENYLALANINE (PHEd)
1e: PHENYLALANINE (PHEe)
1f: PHENYLALANINE (PHEf)
1g: PHENYLALANINE (PHEg)
1h: PHENYLALANINE (PHEh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PHE
2
Mod. Amino Acid
PHENYLALANINE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLN E:372 , GLU E:374 , ASN E:410 , TYR E:412 , ASN E:434 , ALA E:456 , TRP E:457 , GLY E:458 , LEU E:459
BINDING SITE FOR RESIDUE PHE E 509
2
AC4
SOFTWARE
THR G:329 , GLN G:372 , GLU G:374 , ASN G:410 , ASN G:434 , SER G:435 , GLY G:436 , ALA G:456 , TRP G:457 , GLY G:458
BINDING SITE FOR RESIDUE PHE G 509
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_052641 (Q341R, chain E/G, )
2: VAR_071245 (I585I, chain F/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052641
Q
341
R
SYFA_HUMAN
Polymorphism
35087277
E/G
Q
341
R
2
UniProt
VAR_071245
V
585
I
SYFB_HUMAN
Polymorphism
7185
F/H
I
585
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B5 (F:302-379,H:302-379)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B5
PS51483
B5 domain profile.
SYFB_HUMAN
302-379
2
-
-
F:302-379
H:302-379
-
-
-
-
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_B3_4_3l4gP01 (P:117-279)
1b: PFAM_B3_4_3l4gP02 (P:117-279)
1c: PFAM_B3_4_3l4gP03 (P:117-279)
1d: PFAM_B3_4_3l4gP04 (P:117-279)
1e: PFAM_B3_4_3l4gP05 (P:117-279)
1f: PFAM_B3_4_3l4gP06 (P:117-279)
1g: PFAM_B3_4_3l4gP07 (P:117-279)
1h: PFAM_B3_4_3l4gP08 (P:117-279)
2a: PFAM_B5_3l4gP09 (P:304-374)
2b: PFAM_B5_3l4gP10 (P:304-374)
2c: PFAM_B5_3l4gP11 (P:304-374)
2d: PFAM_B5_3l4gP12 (P:304-374)
2e: PFAM_B5_3l4gP13 (P:304-374)
2f: PFAM_B5_3l4gP14 (P:304-374)
2g: PFAM_B5_3l4gP15 (P:304-374)
2h: PFAM_B5_3l4gP16 (P:304-374)
3a: PFAM_tRNA_synt_2d_3l4gO01 (O:209-488)
3b: PFAM_tRNA_synt_2d_3l4gO02 (O:209-488)
3c: PFAM_tRNA_synt_2d_3l4gO03 (O:209-488)
3d: PFAM_tRNA_synt_2d_3l4gO04 (O:209-488)
3e: PFAM_tRNA_synt_2d_3l4gO05 (O:209-488)
3f: PFAM_tRNA_synt_2d_3l4gO06 (O:209-488)
3g: PFAM_tRNA_synt_2d_3l4gO07 (O:209-488)
3h: PFAM_tRNA_synt_2d_3l4gO08 (O:209-488)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PheT-TilS
(7)
Family
:
B3_4
(6)
Homo sapiens (Human)
(1)
1a
B3_4-3l4gP01
P:117-279
1b
B3_4-3l4gP02
P:117-279
1c
B3_4-3l4gP03
P:117-279
1d
B3_4-3l4gP04
P:117-279
1e
B3_4-3l4gP05
P:117-279
1f
B3_4-3l4gP06
P:117-279
1g
B3_4-3l4gP07
P:117-279
1h
B3_4-3l4gP08
P:117-279
Clan
:
no clan defined [family: B5]
(6)
Family
:
B5
(6)
Homo sapiens (Human)
(1)
2a
B5-3l4gP09
P:304-374
2b
B5-3l4gP10
P:304-374
2c
B5-3l4gP11
P:304-374
2d
B5-3l4gP12
P:304-374
2e
B5-3l4gP13
P:304-374
2f
B5-3l4gP14
P:304-374
2g
B5-3l4gP15
P:304-374
2h
B5-3l4gP16
P:304-374
Clan
:
tRNA_synt_II
(64)
Family
:
tRNA-synt_2d
(5)
Homo sapiens (Human)
(1)
3a
tRNA-synt_2d-3l4gO01
O:209-488
3b
tRNA-synt_2d-3l4gO02
O:209-488
3c
tRNA-synt_2d-3l4gO03
O:209-488
3d
tRNA-synt_2d-3l4gO04
O:209-488
3e
tRNA-synt_2d-3l4gO05
O:209-488
3f
tRNA-synt_2d-3l4gO06
O:209-488
3g
tRNA-synt_2d-3l4gO07
O:209-488
3h
tRNA-synt_2d-3l4gO08
O:209-488
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (1.2 MB)
Header - Asym.Unit
Biol.Unit 1 (335 KB)
Header - Biol.Unit 1
Biol.Unit 2 (303 KB)
Header - Biol.Unit 2
Biol.Unit 3 (307 KB)
Header - Biol.Unit 3
Biol.Unit 4 (302 KB)
Header - Biol.Unit 4
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