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3L2O
Asym. Unit
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Asym.Unit (77 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (137 KB)
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(1)
Title
:
STRUCTURE-BASED MECHANISM OF DIMERIZATION-DEPENDENT UBIQUITINATION BY THE SCFFBX4 UBIQUITIN LIGASE
Authors
:
Y. Li, B. Hao
Date
:
15 Dec 09 (Deposition) - 23 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Small G Protein Fold, Ubl Conjugation Pathway, Ubiquitin Protein Ligase, Protein Binding-Cell Cycle Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Li, B. Hao
Structural Basis Of Dimerization-Dependent Ubiquitination B The Scf(Fbx4) Ubiquitin Ligase.
J. Biol. Chem. V. 285 13896 2010
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063504 (P76T, chain B, )
2: VAR_051999 (F1014L, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063504
P
76
T
FBX4_HUMAN
Unclassified
---
B
P
76
T
2
UniProt
VAR_051999
F
14
L
SKP1_HUMAN
Polymorphism
11538034
A
F
1014
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FBOX (B:56-102)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBOX
PS50181
F-box domain profile.
FBX4_HUMAN
56-102
1
B:56-102
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Exons
(5, 5)
Info
All Exons
Exon 1.5b (A:1002-1033)
Exon 1.7 (A:1033-1057 (gaps))
Exon 1.8d (A:1058-1105 (gaps))
Exon 1.9d (A:1106-1152)
Exon 1.9l (A:1153-1160)
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All Exon Boundaries
1: Boundary 1.2a/1.5b
2: Boundary 1.5b/1.7
3: Boundary 1.7/1.8d
4: Boundary 1.8d/1.9d
5: Boundary 1.9d/1.9l
6: Boundary 1.9l/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000353411
2a
ENSE00001169035
chr5:
133512729-133512546
184
SKP1_HUMAN
-
0
0
-
-
1.5b
ENST00000353411
5b
ENSE00000763313
chr5:
133509713-133509617
97
SKP1_HUMAN
1-33
33
1
A:1002-1033
32
1.7
ENST00000353411
7
ENSE00002156080
chr5:
133502934-133502861
74
SKP1_HUMAN
33-57
25
1
A:1033-1057 (gaps)
25
1.8d
ENST00000353411
8d
ENSE00000763311
chr5:
133496821-133496678
144
SKP1_HUMAN
58-105
48
1
A:1058-1105 (gaps)
48
1.9d
ENST00000353411
9d
ENSE00001328116
chr5:
133494286-133494146
141
SKP1_HUMAN
106-152
47
1
A:1106-1152
47
1.9l
ENST00000353411
9l
ENSE00001291683
chr5:
133493459-133492082
1378
SKP1_HUMAN
153-163
11
1
A:1153-1160
8
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3l2oa1 (A:1002-1068)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3l2oa1
A:1002-1068
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_F_box_3l2oB01 (B:57-104)
2a: PFAM_Skp1_POZ_3l2oA01 (A:1003-1067)
3a: PFAM_Skp1_3l2oA02 (A:1085-1160)
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Organisms
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)
(
)
Clan
:
F-box
(7)
Family
:
F-box
(3)
Homo sapiens (Human)
(1)
1a
F-box-3l2oB01
B:57-104
Clan
:
POZ
(36)
Family
:
Skp1_POZ
(18)
Homo sapiens (Human)
(7)
2a
Skp1_POZ-3l2oA01
A:1003-1067
Clan
:
no clan defined [family: Skp1]
(15)
Family
:
Skp1
(15)
Homo sapiens (Human)
(5)
3a
Skp1-3l2oA02
A:1085-1160
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Asym.Unit (77 KB)
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