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3L28
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN K339A MUTANT
Authors
:
D. W. Leung, K. C. Prins, D. M. Borek, M. Farahbakhsh, J. M. Tufariello, P J. C. Nix, L. A. Helgeson, Z. Otwinowski, R. B. Honzatko, C. F. Basler, G. K. Amarasinghe
Date
:
14 Dec 09 (Deposition) - 26 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Rna Binding Domain, Interferon Antiviral Evasion, Rna Replication, Rna-Binding Protein, Transcription, Host Cytoplasm, Interferon Antiviral System Evasion, Rna-Binding, Virion, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. W. Leung, K. C. Prins, D. M. Borek, M. Farahbakhsh, J. M. Tufariello, P. Ramanan, J. C. Nix, L. A. Helgeson, Z. Otwinowski, R. B. Honzatko, C. F. Basler, G. K. Amarasinghe
Structural Basis For Dsrna Recognition And Interferon Antagonism By Ebola Vp35.
Nat. Struct. Mol. Biol. V. 17 165 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 33)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
3
NA
5
Ligand/Ion
SODIUM ION
4
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:229 , PHE A:235 , GLY A:236 , HIS A:240 , GLN A:244 , HOH A:345
BINDING SITE FOR RESIDUE SO4 A 6
02
AC2
SOFTWARE
SER A:266 , ASP A:271 , GLN A:279 , ARG A:283 , ARG B:322 , HOH B:421
BINDING SITE FOR RESIDUE SO4 A 8
03
AC3
SOFTWARE
HOH A:46 , SER A:220 , ALA A:221 , LYS A:222 , LYS A:251
BINDING SITE FOR RESIDUE SO4 A 10
04
AC4
SOFTWARE
GLN A:274
BINDING SITE FOR RESIDUE CL A 1
05
AC5
SOFTWARE
ASP A:257 , HIS A:260
BINDING SITE FOR RESIDUE CL A 9
06
AC6
SOFTWARE
ASP A:230 , ARG B:312
BINDING SITE FOR RESIDUE CL A 12
07
AC7
SOFTWARE
NA B:4 , LEU B:232 , PRO B:233 , GLY B:234 , PHE B:235 , GLY B:236 , THR B:237 , HIS B:240 , HOH B:342 , HOH B:365
BINDING SITE FOR RESIDUE SO4 B 1
08
AC8
SOFTWARE
HOH B:14 , HOH B:115 , LYS B:319 , ARG B:322 , HOH B:451 , PRO E:293 , VAL E:294
BINDING SITE FOR RESIDUE SO4 B 2
09
AC9
SOFTWARE
NA B:3 , ALA B:221 , ARG B:225 , LYS B:251 , HOH B:345
BINDING SITE FOR RESIDUE SO4 B 5
10
BC1
SOFTWARE
SO4 B:5 , LYS B:222 , CL B:341
BINDING SITE FOR RESIDUE NA B 3
11
BC2
SOFTWARE
HOH A:17 , SO4 B:1 , THR B:237 , GLN B:274 , HOH B:365
BINDING SITE FOR RESIDUE NA B 4
12
BC3
SOFTWARE
NA B:3 , ALA B:221
BINDING SITE FOR RESIDUE CL B 341
13
BC4
SOFTWARE
SER B:266 , ASP B:271 , GLN B:279
BINDING SITE FOR RESIDUE CL B 8
14
BC5
SOFTWARE
HOH C:59 , PRO C:318 , LYS C:319 , TRP C:324 , GLY D:270
BINDING SITE FOR RESIDUE NA C 2
15
BC6
SOFTWARE
ARG C:322
BINDING SITE FOR RESIDUE CL C 11
16
BC7
SOFTWARE
NA D:1 , HOH D:58 , LEU D:232 , PRO D:233 , GLY D:234 , PHE D:235 , GLY D:236 , THR D:237 , HIS D:240 , HOH D:352
BINDING SITE FOR RESIDUE SO4 D 4
17
BC8
SOFTWARE
HOH D:90 , ARG D:225 , HOH D:452
BINDING SITE FOR RESIDUE SO4 D 9
18
BC9
SOFTWARE
ASP A:332 , SO4 D:4 , HOH D:18 , LEU D:232 , HIS D:240
BINDING SITE FOR RESIDUE NA D 1
19
CC1
SOFTWARE
SER D:317
BINDING SITE FOR RESIDUE CL D 341
20
CC2
SOFTWARE
ARG D:322
BINDING SITE FOR RESIDUE CL D 7
21
CC3
SOFTWARE
HOH E:89 , SER E:266 , GLU E:269 , ASP E:271 , GLN E:279 , HOH E:444 , ARG F:322
BINDING SITE FOR RESIDUE SO4 E 3
22
CC4
SOFTWARE
GLU E:269 , SO4 F:7 , HOH F:20 , HOH F:25 , SER F:317
BINDING SITE FOR RESIDUE NA E 5
23
CC5
SOFTWARE
GLN E:279
BINDING SITE FOR RESIDUE CL E 341
24
CC6
SOFTWARE
NA E:5 , HOH E:8 , HOH F:135 , LYS F:319 , ARG F:322 , HOH F:357
BINDING SITE FOR RESIDUE SO4 F 7
25
CC7
SOFTWARE
HOH E:443 , GLU F:269 , ARG F:283
BINDING SITE FOR RESIDUE CL F 6
26
CC8
SOFTWARE
GLU F:262 , ARG F:283 , PRO F:285
BINDING SITE FOR RESIDUE CL F 10
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Hetero
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Protein & NOT Site
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Chain A
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Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (137 KB)
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Header - Biol.Unit 1
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