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3L27
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN R312A MUTANT
Authors
:
D. W. Leung, K. C. Prins, D. M. Borek, M. Farahbakhsh, J. M. Tufariello, P J. C. Nix, L. A. Helgeson, Z. Otwinowski, R. B. Honzatko, C. F. Basler, G. K. Amarasinghe
Date
:
14 Dec 09 (Deposition) - 26 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Rna Binding Domain, Interferon Antiviral Evasion, Rna Replication, Rna-Binding Protein, Transcription, Host Cytoplasm, Interferon Antiviral System Evasion, Rna-Binding, Virion, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. W. Leung, K. C. Prins, D. M. Borek, M. Farahbakhsh, J. M. Tufariello, P. Ramanan, J. C. Nix, L. A. Helgeson, Z. Otwinowski, R. B. Honzatko, C. F. Basler, G. K. Amarasinghe
Structural Basis For Dsrna Recognition And Interferon Antagonism By Ebola Vp35.
Nat. Struct. Mol. Biol. V. 17 165 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 28)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: SODIUM ION (NAa)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
5g: PHOSPHATE ION (PO4g)
5h: PHOSPHATE ION (PO4h)
5i: PHOSPHATE ION (PO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
GOL
10
Ligand/Ion
GLYCEROL
3
K
2
Ligand/Ion
POTASSIUM ION
4
NA
1
Ligand/Ion
SODIUM ION
5
PO4
9
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:236
BINDING SITE FOR RESIDUE CL A 5
02
AC2
SOFTWARE
THR A:281 , LYS A:282 , VAL A:284 , GLN A:288
BINDING SITE FOR RESIDUE CL A 7
03
AC3
SOFTWARE
HOH A:127 , ARG A:322 , TRP A:324 , LYS A:339 , GOL A:341 , HOH C:98 , ILE C:258 , PRO C:285
BINDING SITE FOR RESIDUE PO4 A 1
04
AC4
SOFTWARE
GLN A:288 , ASP A:289 , LYS A:319 , ASP A:321
BINDING SITE FOR RESIDUE PO4 A 3
05
AC5
SOFTWARE
ARG A:283 , GOL B:7 , ARG B:322 , GOL B:341
BINDING SITE FOR RESIDUE PO4 A 9
06
AC6
SOFTWARE
PO4 A:1 , HOH A:189 , LYS A:282 , ASP A:321 , ARG A:322 , ARG C:283
BINDING SITE FOR RESIDUE GOL A 341
07
AC7
SOFTWARE
ILE A:227 , HIS A:231 , GLN A:264 , LEU A:267 , HOH A:345 , LYS B:309
BINDING SITE FOR RESIDUE GOL A 4
08
AC8
SOFTWARE
SER A:220 , ALA A:221 , LYS A:222 , LYS A:251 , HOH A:351 , HOH A:359 , HOH A:363
BINDING SITE FOR RESIDUE GOL A 8
09
AC9
SOFTWARE
HOH B:114 , PRO B:285 , ILE B:286 , GLN B:288 , HOH C:177 , ILE C:286
BINDING SITE FOR RESIDUE NA B 3
10
BC1
SOFTWARE
PRO B:217
BINDING SITE FOR RESIDUE CL B 4
11
BC2
SOFTWARE
GOL B:1 , SER B:220 , ALA B:221
BINDING SITE FOR RESIDUE CL B 6
12
BC3
SOFTWARE
GOL B:341 , HOH C:371
BINDING SITE FOR RESIDUE CL B 8
13
BC4
SOFTWARE
HOH B:344 , HOH D:151 , PHE D:235
BINDING SITE FOR RESIDUE CL B 9
14
BC5
SOFTWARE
HOH B:132 , ILE B:227 , HIS B:231 , GLN B:264 , HOH B:350 , HOH B:352
BINDING SITE FOR RESIDUE PO4 B 2
15
BC6
SOFTWARE
CL B:6 , SER B:220 , LYS B:222 , ARG B:225 , LYS B:251 , HOH B:357
BINDING SITE FOR RESIDUE GOL B 1
16
BC7
SOFTWARE
PO4 A:9 , ARG A:283 , LYS B:282 , ASP B:321 , GLY B:323 , ILE B:340 , HOH B:356
BINDING SITE FOR RESIDUE GOL B 7
17
BC8
SOFTWARE
PO4 A:9 , HOH A:96 , CL B:8 , HOH B:104 , PRO B:315 , ARG B:322 , TRP B:324 , LYS B:339
BINDING SITE FOR RESIDUE GOL B 341
18
BC9
SOFTWARE
LEU A:232 , GLY A:234 , HOH A:342 , HOH A:343 , LEU C:232 , GLY C:234
BINDING SITE FOR RESIDUE K C 2
19
CC1
SOFTWARE
GLN C:288 , ASP C:289 , LYS C:319 , ASP C:321
BINDING SITE FOR RESIDUE PO4 C 7
20
CC2
SOFTWARE
ALA C:221 , LYS C:222 , ARG C:225 , LYS C:251
BINDING SITE FOR RESIDUE GOL C 341
21
CC3
SOFTWARE
ARG B:322 , HOH B:367 , PRO C:293 , VAL C:294 , HIS C:296 , HOH C:368 , HOH C:371
BINDING SITE FOR RESIDUE GOL C 10
22
CC4
SOFTWARE
LEU B:232 , GLY B:234 , HOH B:344 , HOH D:2 , LEU D:232 , GLY D:234
BINDING SITE FOR RESIDUE K D 1
23
CC5
SOFTWARE
HOH D:123 , ILE D:227 , HIS D:231 , GLN D:264 , HOH D:355
BINDING SITE FOR RESIDUE PO4 D 4
24
CC6
SOFTWARE
GLN D:288 , ASP D:289 , LYS D:319 , ASP D:321
BINDING SITE FOR RESIDUE PO4 D 5
25
CC7
SOFTWARE
HOH B:71 , HOH B:370 , HOH D:94 , ARG D:322 , TRP D:324 , LYS D:339
BINDING SITE FOR RESIDUE PO4 D 6
26
CC8
SOFTWARE
TRP C:324 , LYS C:339 , HOH C:343 , HOH D:68 , GOL D:342
BINDING SITE FOR RESIDUE PO4 D 8
27
CC9
SOFTWARE
HOH D:179 , SER D:220 , ALA D:221 , LYS D:222 , ARG D:225 , LYS D:251 , HOH D:361
BINDING SITE FOR RESIDUE GOL D 341
28
DC1
SOFTWARE
LYS C:282 , ASP C:321 , ARG C:322 , PO4 D:8 , ARG D:283 , HOH D:371
BINDING SITE FOR RESIDUE GOL D 342
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Filo_VP35_3l27D01 (D:217-340)
1b: PFAM_Filo_VP35_3l27D02 (D:217-340)
1c: PFAM_Filo_VP35_3l27D03 (D:217-340)
1d: PFAM_Filo_VP35_3l27D04 (D:217-340)
View:
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Clans
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)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Filo_VP35]
(7)
Family
:
Filo_VP35
(7)
Zaire ebolavirus (strain Mayinga-76) (ZEBOV) (Zaire Ebola virus)
(4)
1a
Filo_VP35-3l27D01
D:217-340
1b
Filo_VP35-3l27D02
D:217-340
1c
Filo_VP35-3l27D03
D:217-340
1d
Filo_VP35-3l27D04
D:217-340
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