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3L1W
Asym. Unit
Info
Asym.Unit (550 KB)
Biol.Unit 1 (184 KB)
Biol.Unit 2 (186 KB)
Biol.Unit 3 (185 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF A FUNCTIONALLY UNKNOWN CONSERVED PROTEIN FROM ENTEROCOCCUS FAECALIS V583
Authors
:
K. Tan, E. Rakowski, R. Jedrzejczak, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date
:
14 Dec 09 (Deposition) - 12 Jan 10 (Release) - 12 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Apc29019. 2, Conserved Protein, Enterococcus Faecalis V583, Psi-2, Mcsg, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, E. Rakowski, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of A Functionally Unknown Conserved Protein From Enterococcus Faecalis V583
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 60)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
2l: FORMIC ACID (FMTl)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
12
Ligand/Ion
FORMIC ACID
3
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
24
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MSE A:1 , LYS A:2 , ASP A:35 , SER A:37 , LYS A:82 , HOH A:457 , HOH A:687
BINDING SITE FOR RESIDUE SO4 A 258
02
AC2
SOFTWARE
SER A:137 , ALA A:138 , HOH A:334 , HOH A:407 , HOH A:1404 , HOH B:1022
BINDING SITE FOR RESIDUE SO4 A 259
03
AC3
SOFTWARE
PHE A:202 , THR A:203 , TYR A:204 , THR A:205 , HOH A:620
BINDING SITE FOR RESIDUE SO4 A 260
04
AC4
SOFTWARE
HIS A:153 , LYS A:182 , HOH A:1380
BINDING SITE FOR RESIDUE SO4 A 261
05
AC5
SOFTWARE
TYR A:90 , PHE A:91 , TRP A:114 , GLU A:151 , HOH A:1389
BINDING SITE FOR RESIDUE EDO A 262
06
AC6
SOFTWARE
SER A:233 , HOH A:954 , TYR B:193 , GLY B:194 , TRP B:208 , THR B:231 , FMT B:263
BINDING SITE FOR RESIDUE FMT A 263
07
AC7
SOFTWARE
SER A:229 , LEU A:230 , THR A:231 , HOH A:636 , ASP B:232 , FMT B:264
BINDING SITE FOR RESIDUE FMT A 264
08
AC8
SOFTWARE
MSE B:1 , LYS B:2 , ASP B:35 , SER B:37 , LYS B:82 , HOH B:291 , HOH B:465 , HOH B:502 , HOH B:1504
BINDING SITE FOR RESIDUE SO4 B 258
09
AC9
SOFTWARE
SER B:137 , ALA B:138 , HOH B:308 , HOH B:352
BINDING SITE FOR RESIDUE SO4 B 259
10
BC1
SOFTWARE
PHE B:202 , THR B:203 , TYR B:204 , THR B:205 , HOH B:544 , HOH B:1397 , HOH B:1480
BINDING SITE FOR RESIDUE SO4 B 260
11
BC2
SOFTWARE
HIS B:153 , LYS B:182
BINDING SITE FOR RESIDUE SO4 B 261
12
BC3
SOFTWARE
TYR B:90 , PHE B:91 , TRP B:114 , GLU B:151
BINDING SITE FOR RESIDUE EDO B 262
13
BC4
SOFTWARE
FMT A:263 , TYR B:193 , SER B:229 , LEU B:230 , THR B:231 , HOH B:840
BINDING SITE FOR RESIDUE FMT B 263
14
BC5
SOFTWARE
TYR A:193 , GLY A:194 , TRP A:208 , THR A:231 , FMT A:264 , SER B:233 , HOH B:959
BINDING SITE FOR RESIDUE FMT B 264
15
BC6
SOFTWARE
MSE C:1 , LYS C:2 , ASP C:35 , SER C:37 , LYS C:82 , HOH C:566 , HOH C:596 , HOH C:803
BINDING SITE FOR RESIDUE SO4 C 258
16
BC7
SOFTWARE
SER C:137 , ALA C:138 , HOH C:296 , HOH C:609
BINDING SITE FOR RESIDUE SO4 C 259
17
BC8
SOFTWARE
PHE C:202 , THR C:203 , TYR C:204 , THR C:205 , HOH C:498 , HOH C:1481
BINDING SITE FOR RESIDUE SO4 C 260
18
BC9
SOFTWARE
HIS C:153 , LYS C:182 , HOH C:1455
BINDING SITE FOR RESIDUE SO4 C 261
19
CC1
SOFTWARE
TYR C:90 , PHE C:91 , TRP C:114 , GLU C:151 , HOH C:1507
BINDING SITE FOR RESIDUE EDO C 262
20
CC2
SOFTWARE
TYR C:193 , SER C:229 , LEU C:230 , THR C:231 , HOH C:792 , FMT D:263
BINDING SITE FOR RESIDUE FMT C 263
21
CC3
SOFTWARE
SER C:233 , HOH C:755 , TYR D:193 , GLY D:194 , TRP D:208 , THR D:231 , FMT D:264
BINDING SITE FOR RESIDUE FMT C 264
22
CC4
SOFTWARE
MSE D:1 , LYS D:2 , ASP D:35 , SER D:37 , LYS D:82 , HOH D:554 , HOH D:865 , HOH D:1276
BINDING SITE FOR RESIDUE SO4 D 258
23
CC5
SOFTWARE
SER D:137 , ALA D:138 , HOH D:307 , HOH D:392 , HOH D:1029
BINDING SITE FOR RESIDUE SO4 D 259
24
CC6
SOFTWARE
PHE D:202 , THR D:203 , TYR D:204 , THR D:205 , HOH D:535 , HOH D:1056 , HOH D:1469
BINDING SITE FOR RESIDUE SO4 D 260
25
CC7
SOFTWARE
HIS D:153 , LYS D:182
BINDING SITE FOR RESIDUE SO4 D 261
26
CC8
SOFTWARE
TYR D:90 , PHE D:91 , TRP D:114 , GLU D:151 , HOH D:1503
BINDING SITE FOR RESIDUE EDO D 262
27
CC9
SOFTWARE
TYR C:193 , GLY C:194 , TRP C:208 , THR C:231 , FMT C:263 , SER D:233 , HOH D:982
BINDING SITE FOR RESIDUE FMT D 263
28
DC1
SOFTWARE
ASP C:232 , FMT C:264 , TYR D:193 , SER D:229 , LEU D:230 , THR D:231 , HOH D:782
BINDING SITE FOR RESIDUE FMT D 264
29
DC2
SOFTWARE
MSE E:1 , LYS E:2 , ASP E:35 , SER E:37 , LYS E:82 , HOH E:475 , HOH E:577 , HOH E:1334
BINDING SITE FOR RESIDUE SO4 E 258
30
DC3
SOFTWARE
SER E:137 , ALA E:138 , HOH E:315 , HOH E:447
BINDING SITE FOR RESIDUE SO4 E 259
31
DC4
SOFTWARE
PHE E:202 , THR E:203 , TYR E:204 , THR E:205 , HOH E:932
BINDING SITE FOR RESIDUE SO4 E 260
32
DC5
SOFTWARE
HIS E:153 , LYS E:182 , HOH E:1490
BINDING SITE FOR RESIDUE SO4 E 261
33
DC6
SOFTWARE
TYR E:90 , PHE E:91 , TRP E:114 , GLU E:151
BINDING SITE FOR RESIDUE EDO E 262
34
DC7
SOFTWARE
TYR E:193 , SER E:229 , LEU E:230 , THR E:231 , HOH E:762 , ASP F:232 , FMT F:263
BINDING SITE FOR RESIDUE FMT E 263
35
DC8
SOFTWARE
ASP E:232 , SER E:233 , HOH E:916 , TYR F:193 , GLY F:194 , TRP F:208 , THR F:231 , FMT F:264
BINDING SITE FOR RESIDUE FMT E 264
36
DC9
SOFTWARE
MSE F:1 , LYS F:2 , ASP F:35 , SER F:37 , LYS F:82 , HOH F:506 , HOH F:763 , HOH F:912 , HOH F:1472
BINDING SITE FOR RESIDUE SO4 F 258
37
EC1
SOFTWARE
SER F:137 , ALA F:138 , ARG F:141 , HOH F:347 , HOH F:373
BINDING SITE FOR RESIDUE SO4 F 259
38
EC2
SOFTWARE
PHE F:202 , THR F:203 , TYR F:204 , THR F:205 , HOH F:888 , HOH F:1060 , HOH F:1437
BINDING SITE FOR RESIDUE SO4 F 260
39
EC3
SOFTWARE
HIS F:153 , LYS F:182
BINDING SITE FOR RESIDUE SO4 F 261
40
EC4
SOFTWARE
TYR F:90 , PHE F:91 , TRP F:114 , GLU F:151
BINDING SITE FOR RESIDUE EDO F 262
41
EC5
SOFTWARE
TYR E:193 , GLY E:194 , TRP E:208 , THR E:231 , FMT E:263 , ASP F:232 , SER F:233 , HOH F:1199
BINDING SITE FOR RESIDUE FMT F 263
42
EC6
SOFTWARE
FMT E:264 , TYR F:193 , SER F:229 , LEU F:230 , THR F:231 , HOH F:767
BINDING SITE FOR RESIDUE FMT F 264
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Exo_endo_phos_3l1wF01 (F:4-242)
1b: PFAM_Exo_endo_phos_3l1wF02 (F:4-242)
1c: PFAM_Exo_endo_phos_3l1wF03 (F:4-242)
1d: PFAM_Exo_endo_phos_3l1wF04 (F:4-242)
1e: PFAM_Exo_endo_phos_3l1wF05 (F:4-242)
1f: PFAM_Exo_endo_phos_3l1wF06 (F:4-242)
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Clans
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(
)
(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Exo_endo_phos]
(21)
Family
:
Exo_endo_phos
(21)
Enterococcus faecalis (Streptococcus faecalis)
(1)
1a
Exo_endo_phos-3l1wF01
F:4-242
1b
Exo_endo_phos-3l1wF02
F:4-242
1c
Exo_endo_phos-3l1wF03
F:4-242
1d
Exo_endo_phos-3l1wF04
F:4-242
1e
Exo_endo_phos-3l1wF05
F:4-242
1f
Exo_endo_phos-3l1wF06
F:4-242
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