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3L1T
Biol. Unit 2
Info
Asym.Unit (335 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (163 KB)
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(1)
Title
:
E. COLI NRFA SULFITE OCMPLEX
Authors
:
T. A. Clarke, A. M. Hemmings, J. N. Butt
Date
:
14 Dec 09 (Deposition) - 27 Oct 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Multiheme, Sulfite, Nitrite Reductase, C-Type Cytochrome, Electron Transport, Heme, Iron, Metal-Binding, Oxidoreductase, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. L. Kemp, T. A. Clarke, S. J. Marritt, C. Lockwood, S. R. Poock, A. M. Hemmings, D. J. Richardson, M. R. Cheesman, J. N. Butt
Kinetic And Thermodynamic Resolution Of The Interactions Between Sulfite And The Pentahaem Cytochrome Nrfa From Escherichia Coli
Biochem. J. V. 431 73 2010
[
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: HEME C (HECa)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
3q: HEME C (HECq)
3r: HEME C (HECr)
3s: HEME C (HECs)
3t: HEME C (HECt)
4a: SULFITE ION (SO3a)
4b: SULFITE ION (SO3b)
4c: SULFITE ION (SO3c)
4d: SULFITE ION (SO3d)
4e: SULFITE ION (SO3e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
HEC
10
Ligand/Ion
HEME C
4
SO3
2
Ligand/Ion
SULFITE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: CC4 (SOFTWARE)
02: CC5 (SOFTWARE)
03: CC6 (SOFTWARE)
04: CC7 (SOFTWARE)
05: CC8 (SOFTWARE)
06: CC9 (SOFTWARE)
07: DC1 (SOFTWARE)
08: DC2 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC4 (SOFTWARE)
11: DC5 (SOFTWARE)
12: DC6 (SOFTWARE)
13: DC7 (SOFTWARE)
14: DC8 (SOFTWARE)
15: DC9 (SOFTWARE)
16: EC1 (SOFTWARE)
17: EC2 (SOFTWARE)
18: EC3 (SOFTWARE)
19: EC4 (SOFTWARE)
20: EC5 (SOFTWARE)
21: EC6 (SOFTWARE)
22: EC7 (SOFTWARE)
23: EC8 (SOFTWARE)
24: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC4
SOFTWARE
GLU C:215 , TYR C:216 , LYS C:261 , GLN C:263 , HOH C:525 , HOH C:544
BINDING SITE FOR RESIDUE CA C 1
02
CC5
SOFTWARE
HEC C:3 , HEC C:4 , PRO C:91
BINDING SITE FOR RESIDUE CA C 2
03
CC6
SOFTWARE
HEC C:3 , TYR C:88 , ASN C:89 , ASP C:100 , THR C:104 , ARG C:106 , LEU C:118 , CYS C:122 , CYS C:125 , LYS C:126 , CYS C:212 , HIS C:213 , TYR C:216 , HIS C:264 , HIS C:388 , SO3 C:481 , HOH C:485 , HOH C:491 , HOH C:501 , HOH C:519 , HOH C:562 , HOH C:608 , HOH C:617
BINDING SITE FOR RESIDUE HEC C 479
04
CC7
SOFTWARE
HEC C:3 , HIS C:49 , GLN C:52 , TRP C:56 , GLY C:159 , CYS C:160 , CYS C:163 , HIS C:164 , GLY C:174 , ARG C:201 , GLN C:205 , ILE C:283 , MET C:287 , LYS C:289 , TYR C:298 , THR C:299 , HIS C:301 , HOH C:486 , HOH C:606
BINDING SITE FOR RESIDUE HEC C 480
05
CC8
SOFTWARE
CA C:2 , HEC C:4 , GLN C:62 , PRO C:91 , ARG C:92 , GLY C:93 , HIS C:94 , PHE C:96 , ALA C:97 , ASP C:100 , CYS C:125 , LYS C:126 , LEU C:158 , VAL C:208 , CYS C:209 , CYS C:212 , HIS C:213 , HIS C:286 , MET C:287 , ILE C:303 , HEC C:479 , HEC C:480 , HOH C:488
BINDING SITE FOR RESIDUE HEC C 3
06
CC9
SOFTWARE
CA C:2 , HEC C:3 , HEC C:5 , PRO C:91 , HIS C:213 , GLU C:266 , TRP C:270 , HIS C:275 , VAL C:280 , THR C:281 , CYS C:282 , CYS C:285 , HIS C:286 , ASN C:305 , PRO C:306 , VAL C:329 , HIS C:388 , HIS C:391 , MET C:392 , HIS C:393 , HOH C:621 , HOH C:631
BINDING SITE FOR RESIDUE HEC C 4
07
DC1
SOFTWARE
HEC C:4 , EDO C:7 , ILE C:274 , HIS C:275 , VAL C:280 , PHE C:307 , THR C:313 , CYS C:314 , CYS C:317 , HIS C:318 , ARG C:332 , HEC D:5 , ILE D:274 , HIS D:318 , GLN D:320
BINDING SITE FOR RESIDUE HEC C 5
08
DC2
SOFTWARE
ARG C:106 , TYR C:216 , GLN C:263 , HIS C:264 , HEC C:479 , HOH C:608 , HOH C:673
BINDING SITE FOR RESIDUE SO3 C 481
09
DC3
SOFTWARE
PHE C:307 , ASP C:308 , ASN C:309 , PHE C:310 , ALA C:311 , LYS C:322
BINDING SITE FOR RESIDUE EDO C 482
10
DC4
SOFTWARE
TYR C:82 , TYR C:216 , PHE C:218 , GLN C:263 , HOH C:511 , HOH C:544 , HOH C:561
BINDING SITE FOR RESIDUE EDO C 483
11
DC5
SOFTWARE
GLN C:320 , LEU C:325 , VAL C:328 , ILE D:274 , ASN D:278
BINDING SITE FOR RESIDUE EDO C 484
12
DC6
SOFTWARE
HEC C:5 , ARG C:332 , PRO C:395 , GLU C:396 , HEC D:5 , ARG D:332 , GLU D:396
BINDING SITE FOR RESIDUE EDO C 7
13
DC7
SOFTWARE
ASP C:345 , HIS C:349 , HOH C:788
BINDING SITE FOR RESIDUE EDO C 9
14
DC8
SOFTWARE
MET C:233 , LYS C:234 , VAL C:235 , GLU C:397 , MET C:401 , HOH C:585
BINDING SITE FOR RESIDUE EDO C 10
15
DC9
SOFTWARE
GLU D:215 , TYR D:216 , LYS D:261 , GLN D:263 , HOH D:959 , HOH D:973
BINDING SITE FOR RESIDUE CA D 1
16
EC1
SOFTWARE
HEC D:3 , HEC D:4 , PRO D:91 , HOH D:512
BINDING SITE FOR RESIDUE CA D 2
17
EC2
SOFTWARE
HEC D:3 , TYR D:88 , ASN D:89 , ASP D:100 , THR D:104 , ARG D:106 , CYS D:122 , CYS D:125 , LYS D:126 , CYS D:212 , HIS D:213 , TYR D:216 , HIS D:264 , HIS D:388 , SO3 D:481 , HOH D:507 , HOH D:508 , HOH D:525 , HOH D:606 , HOH D:754
BINDING SITE FOR RESIDUE HEC D 479
18
EC3
SOFTWARE
HIS D:49 , GLN D:52 , TRP D:56 , GLY D:159 , CYS D:160 , CYS D:163 , HIS D:164 , GLY D:174 , PRO D:176 , LEU D:178 , ARG D:201 , GLN D:205 , ILE D:283 , MET D:287 , LYS D:289 , THR D:299 , HIS D:301
BINDING SITE FOR RESIDUE HEC D 480
19
EC4
SOFTWARE
CA D:2 , HEC D:4 , GLN D:62 , PRO D:91 , ARG D:92 , GLY D:93 , HIS D:94 , PHE D:96 , ALA D:97 , ASP D:100 , CYS D:125 , LYS D:126 , LEU D:158 , VAL D:208 , CYS D:209 , CYS D:212 , HIS D:213 , ILE D:283 , HIS D:286 , MET D:287 , ILE D:303 , HEC D:479 , HOH D:512 , HOH D:611
BINDING SITE FOR RESIDUE HEC D 3
20
EC5
SOFTWARE
CA D:2 , HEC D:3 , HEC D:5 , HIS D:213 , GLU D:266 , TRP D:270 , HIS D:275 , VAL D:280 , THR D:281 , CYS D:282 , CYS D:285 , HIS D:286 , ASN D:305 , PRO D:306 , VAL D:329 , HIS D:388 , HIS D:391 , MET D:392 , HIS D:393 , HOH D:492 , HOH D:796
BINDING SITE FOR RESIDUE HEC D 4
21
EC6
SOFTWARE
HEC C:5 , EDO C:7 , HIS C:318 , GLN C:320 , HEC D:4 , HIS D:275 , ASN D:278 , VAL D:280 , ASP D:284 , PHE D:307 , THR D:313 , CYS D:314 , CYS D:317 , HIS D:318 , ARG D:332 , MET D:392 , HOH D:524
BINDING SITE FOR RESIDUE HEC D 5
22
EC7
SOFTWARE
PHE D:84 , ARG D:106 , TYR D:216 , HIS D:264 , HEC D:479
BINDING SITE FOR RESIDUE SO3 D 481
23
EC8
SOFTWARE
ALA D:324 , LYS D:327 , VAL D:328 , HOH D:953
BINDING SITE FOR RESIDUE EDO D 482
24
EC9
SOFTWARE
PHE D:307 , ASP D:308 , PHE D:310 , ALA D:311 , LYS D:322
BINDING SITE FOR RESIDUE EDO D 11
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (C:155-323,D:155-323)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
NRFA_ECOLI
155-323
2
-
-
C:155-323
D:155-323
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3l1ta_ (A:)
1b: SCOP_d3l1tb_ (B:)
1c: SCOP_d3l1tc_ (C:)
1d: SCOP_d3l1td_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
automated matches
(16)
Escherichia coli K-12 [TaxId: 83333]
(1)
1a
d3l1ta_
A:
1b
d3l1tb_
B:
1c
d3l1tc_
C:
1d
d3l1td_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Cytochrom_C552_3l1tD01 (D:41-474)
1b: PFAM_Cytochrom_C552_3l1tD02 (D:41-474)
1c: PFAM_Cytochrom_C552_3l1tD03 (D:41-474)
1d: PFAM_Cytochrom_C552_3l1tD04 (D:41-474)
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(
)
Clan
:
Multiheme_cytos
(34)
Family
:
Cytochrom_C552
(6)
Escherichia coli (strain K12)
(3)
1a
Cytochrom_C552-3l1tD01
D:41-474
1b
Cytochrom_C552-3l1tD02
D:41-474
1c
Cytochrom_C552-3l1tD03
D:41-474
1d
Cytochrom_C552-3l1tD04
D:41-474
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Asymmetric Unit 1
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