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3L0B
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SCP1 PHOSPHATASE D206A MUTANT PHOSPHORYL-INTERMEDIATE
Authors
:
M. Zhang, Y. Zhang
Date
:
09 Dec 09 (Deposition) - 23 Mar 10 (Release) - 19 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Had Superfamily, Phosphoryl-Aspartate Intermediate, Small C-Terminal Domain Phosphatase, Protein Phosphatase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zhang, J. Liu, Y. Kim, J. E. Dixon, S. L. Pfaff, G. N. Gill, J. P. Noel, Y. Zhang
Structural And Functional Analysis Of The Phosphoryl Transfer Reaction Mediated By The Human Small C-Terminal Domain Phosphatase, Scp1.
Protein Sci. V. 19 974 2010
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
2a: MAGNESIUM ION (MGa)
3a: ASPARTYL PHOSPHATE (PHDa)
3b: ASPARTYL PHOSPHATE (PHDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PG
1
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
PHD
2
Mod. Amino Acid
ASPARTYL PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:1 , HOH A:2 , PHD A:96 , ASP A:98 , ASN A:207
BINDING SITE FOR RESIDUE MG A 257
2
AC2
SOFTWARE
HOH A:23 , SER A:105 , PHE A:106 , TYR A:158 , ARG A:178 , GLY A:186
BINDING SITE FOR RESIDUE 1PG A 300
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FCP1 (A:86-244,B:86-244)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FCP1
PS50969
FCP1 homology domain profile.
CTDS1_HUMAN
86-244
2
A:86-244
B:86-244
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Exons
(5, 10)
Info
All Exons
Exon 1.10a (A:77-107 | B:77-107)
Exon 1.11a (A:108-126 | B:108-126)
Exon 1.12b (A:127-157 | B:127-157)
Exon 1.13c (A:158-219 | B:158-219)
Exon 1.14f (A:220-256 | B:220-256)
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All Exon Boundaries
1: Boundary 1.9c/1.10a
2: Boundary 1.10a/1.11a
3: Boundary 1.11a/1.12b
4: Boundary 1.12b/1.13c
5: Boundary 1.13c/1.14f
6: Boundary 1.14f/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000273062
5a
ENSE00001038975
chr2:
219264478-219264880
403
CTDS1_HUMAN
1-23
23
0
-
-
1.9c
ENST00000273062
9c
ENSE00001038976
chr2:
219266287-219266435
149
CTDS1_HUMAN
23-72
50
0
-
-
1.10a
ENST00000273062
10a
ENSE00001038973
chr2:
219266834-219266938
105
CTDS1_HUMAN
73-107
35
2
A:77-107
B:77-107
31
31
1.11a
ENST00000273062
11a
ENSE00001038977
chr2:
219267072-219267128
57
CTDS1_HUMAN
108-126
19
2
A:108-126
B:108-126
19
19
1.12b
ENST00000273062
12b
ENSE00001621424
chr2:
219267758-219267850
93
CTDS1_HUMAN
127-157
31
2
A:127-157
B:127-157
31
31
1.13c
ENST00000273062
13c
ENSE00001038974
chr2:
219267955-219268140
186
CTDS1_HUMAN
158-219
62
2
A:158-219
B:158-219
62
62
1.14f
ENST00000273062
14f
ENSE00000965954
chr2:
219269020-219270664
1645
CTDS1_HUMAN
220-261
42
2
A:220-256
B:220-256
37
37
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3l0ba_ (A:)
1b: SCOP_d3l0bb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
NLI interacting factor-like phosphatase
(10)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3l0ba_
A:
1b
d3l0bb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3l0bA00 (A:77-256)
1b: CATH_3l0bB00 (B:77-256)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Human (Homo sapiens)
(42)
1a
3l0bA00
A:77-256
1b
3l0bB00
B:77-256
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NIF_3l0bB01 (B:91-251)
1b: PFAM_NIF_3l0bB02 (B:91-251)
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Clan
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HAD
(186)
Family
:
NIF
(7)
Homo sapiens (Human)
(6)
1a
NIF-3l0bB01
B:91-251
1b
NIF-3l0bB02
B:91-251
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