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3KZQ
Asym. Unit
Info
Asym.Unit (232 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (77 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE PROTEIN WITH UNKNOWN FUNCTION FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633
Authors
:
R. Zhang, A. Weger, G. Shackelford, A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
Date
:
08 Dec 09 (Deposition) - 02 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Protein With Unknown Function, Vibrio Parahaemolyticus, Structural Genomics, Psi, Mcsg, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Zhang, A. Weger, G. Shackelford, A. Joachimiak
The Crystal Structure Of The Protein With Unknown Function From Vibrio Parahaemolyticus Rimd 2210633
To Be Published
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6a)
3b: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6b)
3c: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6c)
3d: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6d)
3e: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6e)
3f: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
PG6
6
Ligand/Ion
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:38 , GLY A:99 , ASP A:102 , SER A:103 , TYR A:104 , GLU A:105 , GLN A:106 , GLN A:158 , HOH A:260 , HOH A:1093
BINDING SITE FOR RESIDUE PG6 A 209
02
AC2
SOFTWARE
LYS B:73
BINDING SITE FOR RESIDUE MG B 209
03
AC3
SOFTWARE
GLY B:18 , PRO B:21 , THR B:72 , HOH B:292
BINDING SITE FOR RESIDUE MG B 210
04
AC4
SOFTWARE
ALA B:180 , TYR B:181 , PHE B:182 , PRO E:52 , PG6 E:210 , HOH E:1049
BINDING SITE FOR RESIDUE MG B 211
05
AC5
SOFTWARE
MET B:12 , CYS B:13 , SER B:14 , TRP B:15 , GLN B:69 , ARG B:86 , TYR B:170 , TYR B:188 , HOH B:239 , HOH B:255 , HOH B:547 , HOH B:634 , HOH B:646
BINDING SITE FOR RESIDUE PG6 B 212
06
AC6
SOFTWARE
LEU C:49 , PRO C:52 , GLU C:54 , MET C:55 , LYS C:58 , HOH C:250 , ALA F:180 , TYR F:181 , PHE F:182 , HOH F:517
BINDING SITE FOR RESIDUE PG6 C 209
07
AC7
SOFTWARE
GLN C:56 , TRP C:79 , LYS C:80 , CYS C:82 , THR C:83 , PRO C:84 , HOH C:350
BINDING SITE FOR RESIDUE GOL C 210
08
AC8
SOFTWARE
ASP C:102 , SER C:103 , TYR C:104 , GLU C:105 , GLN C:106 , HOH C:216 , HOH C:281
BINDING SITE FOR RESIDUE GOL C 211
09
AC9
SOFTWARE
MET C:12 , CYS C:13 , SER C:14 , TRP C:15 , LEU C:59 , ARG C:86 , HOH C:401 , HOH C:468
BINDING SITE FOR RESIDUE GOL C 212
10
BC1
SOFTWARE
GLY D:99 , ASP D:102 , SER D:103 , TYR D:104 , GLU D:105 , GLN D:106 , HOH D:453
BINDING SITE FOR RESIDUE GOL D 209
11
BC2
SOFTWARE
SER D:14 , TRP D:15 , ARG D:86
BINDING SITE FOR RESIDUE GOL D 210
12
BC3
SOFTWARE
TRP E:17 , GLY E:18 , LYS E:20 , PRO E:21 , LEU E:70 , THR E:72 , HIS E:113 , HOH E:221 , HOH E:395 , HOH E:789 , HOH E:1092
BINDING SITE FOR RESIDUE PG6 E 209
13
BC4
SOFTWARE
ASP B:179 , ALA B:180 , TYR B:181 , PRO B:183 , MG B:211 , HOH B:238 , LEU E:49 , PRO E:50 , PRO E:52 , GLU E:54 , MET E:55 , HOH E:1072
BINDING SITE FOR RESIDUE PG6 E 210
14
BC5
SOFTWARE
TYR E:38 , VAL E:40 , GLY E:99 , ASP E:102 , SER E:103 , TYR E:104 , GLU E:105 , GLN E:106 , GLN E:158 , HOH E:223 , HOH E:231 , HOH E:764
BINDING SITE FOR RESIDUE PG6 E 211
15
BC6
SOFTWARE
MET E:55
BINDING SITE FOR RESIDUE MG E 212
16
BC7
SOFTWARE
GLY F:99 , ASP F:102 , SER F:103 , TYR F:104 , GLU F:105 , GLN F:106 , HOH F:253
BINDING SITE FOR RESIDUE GOL F 209
17
BC8
SOFTWARE
ARG A:118 , MET A:120 , GLN A:130 , ARG F:118 , MET F:120 , GLN F:130
BINDING SITE FOR RESIDUE GOL F 210
18
BC9
SOFTWARE
MET F:12 , CYS F:13 , SER F:14 , TRP F:15 , ARG F:86 , HOH F:260 , HOH F:287 , HOH F:405 , HOH F:668 , HOH F:743
BINDING SITE FOR RESIDUE GOL F 211
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Thioredoxin_5_3kzqF01 (F:6-187)
1b: PFAM_Thioredoxin_5_3kzqF02 (F:6-187)
1c: PFAM_Thioredoxin_5_3kzqF03 (F:6-187)
1d: PFAM_Thioredoxin_5_3kzqF04 (F:6-187)
1e: PFAM_Thioredoxin_5_3kzqF05 (F:6-187)
1f: PFAM_Thioredoxin_5_3kzqF06 (F:6-187)
View:
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Clans
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)
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(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
Thioredoxin_5
(1)
Vibrio parahaemolyticus
(1)
1a
Thioredoxin_5-3kzqF01
F:6-187
1b
Thioredoxin_5-3kzqF02
F:6-187
1c
Thioredoxin_5-3kzqF03
F:6-187
1d
Thioredoxin_5-3kzqF04
F:6-187
1e
Thioredoxin_5-3kzqF05
F:6-187
1f
Thioredoxin_5-3kzqF06
F:6-187
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Asym.Unit (232 KB)
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Biol.Unit 1 (78 KB)
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Biol.Unit 2 (78 KB)
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Biol.Unit 3 (77 KB)
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