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3KZD
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FREE T-CELL LYMPHOMA INVASION AND METASTASIS-1 PDZ DOMAIN
Authors
:
T. R. Shepherd, E. J. Fuentes
Date
:
08 Dec 09 (Deposition) - 21 Apr 10 (Release) - 19 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pdz, Cell Junction, Cell Adhesion, Signaling Protein, Tiam1, Guanine Nucleotide Exchange Factor, Guanine-Nucleotide Releasing Factor, Lipoprotein, Myristate, Phosphoprotein, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. R. Shepherd, S. M. Klaus, X. Liu, S. Ramaswamy, K. A. Demali, E. J. Fuentes
The Tiam1 Pdz Domain Couples To Syndecan1 And Promotes Cell-Matrix Adhesion.
J. Mol. Biol. V. 398 730 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051993 (H844H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051993
Q
844
H
TIAM1_HUMAN
Polymorphism
16987932
A
H
844
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:845-908)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
TIAM1_HUMAN
845-908
1
A:845-908
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Exons
(3, 3)
Info
All Exons
Exon 1.16 (A:840-859 (gaps))
Exon 1.17 (A:859-888)
Exon 1.18 (A:888-930)
View:
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Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000286827
2
ENSE00001372551
chr21:
32931290-32931240
51
TIAM1_HUMAN
-
0
0
-
-
1.3
ENST00000286827
3
ENSE00001367893
chr21:
32836348-32836296
53
TIAM1_HUMAN
-
0
0
-
-
1.5
ENST00000286827
5
ENSE00001383160
chr21:
32711737-32711558
180
TIAM1_HUMAN
-
0
0
-
-
1.6
ENST00000286827
6
ENSE00001365575
chr21:
32649224-32649048
177
TIAM1_HUMAN
-
0
0
-
-
1.7b
ENST00000286827
7b
ENSE00001025653
chr21:
32639299-32638326
974
TIAM1_HUMAN
1-321
321
0
-
-
1.8
ENST00000286827
8
ENSE00001025652
chr21:
32624505-32624058
448
TIAM1_HUMAN
322-471
150
0
-
-
1.9
ENST00000286827
9
ENSE00001025654
chr21:
32617976-32617804
173
TIAM1_HUMAN
471-528
58
0
-
-
1.10
ENST00000286827
10
ENSE00001025660
chr21:
32598266-32598042
225
TIAM1_HUMAN
529-603
75
0
-
-
1.11
ENST00000286827
11
ENSE00001025647
chr21:
32595907-32595722
186
TIAM1_HUMAN
604-665
62
0
-
-
1.12
ENST00000286827
12
ENSE00001025659
chr21:
32590015-32589869
147
TIAM1_HUMAN
666-714
49
0
-
-
1.13a
ENST00000286827
13a
ENSE00001265070
chr21:
32585788-32585714
75
TIAM1_HUMAN
715-739
25
0
-
-
1.14
ENST00000286827
14
ENSE00001025641
chr21:
32582531-32582361
171
TIAM1_HUMAN
740-796
57
0
-
-
1.15
ENST00000286827
15
ENSE00001025658
chr21:
32575328-32575224
105
TIAM1_HUMAN
797-831
35
0
-
-
1.16
ENST00000286827
16
ENSE00001025636
chr21:
32567621-32567540
82
TIAM1_HUMAN
832-859
28
1
A:840-859 (gaps)
20
1.17
ENST00000286827
17
ENSE00001025648
chr21:
32559403-32559317
87
TIAM1_HUMAN
859-888
30
1
A:859-888
30
1.18
ENST00000286827
18
ENSE00001025649
chr21:
32554962-32554738
225
TIAM1_HUMAN
888-963
76
1
A:888-930
43
1.19
ENST00000286827
19
ENSE00001025650
chr21:
32537382-32537279
104
TIAM1_HUMAN
963-997
35
0
-
-
1.20
ENST00000286827
20
ENSE00001025643
chr21:
32526744-32526565
180
TIAM1_HUMAN
998-1057
60
0
-
-
1.21
ENST00000286827
21
ENSE00001025638
chr21:
32525452-32525384
69
TIAM1_HUMAN
1058-1080
23
0
-
-
1.22
ENST00000286827
22
ENSE00001025637
chr21:
32525079-32524954
126
TIAM1_HUMAN
1081-1122
42
0
-
-
1.23b
ENST00000286827
23b
ENSE00001025651
chr21:
32519321-32519213
109
TIAM1_HUMAN
1123-1159
37
0
-
-
1.24
ENST00000286827
24
ENSE00001610053
chr21:
32513822-32513643
180
TIAM1_HUMAN
1159-1219
61
0
-
-
1.25
ENST00000286827
25
ENSE00001722006
chr21:
32513554-32513436
119
TIAM1_HUMAN
1219-1258
40
0
-
-
1.26
ENST00000286827
26
ENSE00001700177
chr21:
32508359-32508251
109
TIAM1_HUMAN
1259-1295
37
0
-
-
1.27
ENST00000286827
27
ENSE00001806004
chr21:
32503266-32503208
59
TIAM1_HUMAN
1295-1314
20
0
-
-
1.28a
ENST00000286827
28a
ENSE00001667545
chr21:
32502633-32502531
103
TIAM1_HUMAN
1315-1349
35
0
-
-
1.29
ENST00000286827
29
ENSE00001597652
chr21:
32499470-32499383
88
TIAM1_HUMAN
1349-1378
30
0
-
-
1.30a
ENST00000286827
30a
ENSE00001769773
chr21:
32497012-32496840
173
TIAM1_HUMAN
1378-1436
59
0
-
-
1.31b
ENST00000286827
31b
ENSE00001612577
chr21:
32493155-32490734
2422
TIAM1_HUMAN
1436-1591
156
0
-
-
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SCOP Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_3kzdA01 (A:845-925)
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-3kzdA01
A:845-925
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Asymmetric Unit 1
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Asym.Unit (34 KB)
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