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3KY9
Biol. Unit 1
Info
Asym.Unit (394 KB)
Biol.Unit 1 (193 KB)
Biol.Unit 2 (196 KB)
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(1)
Title
:
AUTOINHIBITED VAV1
Authors
:
D. R. Tomchick, M. K. Rosen, M. Machius, B. Yu
Date
:
04 Dec 09 (Deposition) - 23 Feb 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Vav1, Calponin Homology Domain, Dbl Homology Domain, Pleckstrin Homology Domain, C1 Domain, Guanine-Nucleotide Releasing Factor, Metal-Binding, Phosphoprotein, Proto-Oncogene, Sh2 Domain, Sh3 Domain, Zinc-Finger, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Yu, I. R. Martins, P. Li, G. K. Amarasinghe, J. Umetani, M. E. Fernandez-Zapico, D. D. Billadeau, M. Machius, D. R. Tomchick, M. K. Rosen
Structural And Energetic Mechanisms Of Cooperative Autoinhibition And Activation Of Vav1
Cell(Cambridge, Mass. ) V. 140 246 2010
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:529 , CYS A:532 , HIS A:554 , CYS A:557
BINDING SITE FOR RESIDUE ZN A 901
2
AC2
SOFTWARE
HIS A:516 , CYS A:546 , CYS A:549 , CYS A:564
BINDING SITE FOR RESIDUE ZN A 902
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
2: DH_2 (A:194-373)
3: DH_1 (A:322-347)
4: PH_DOMAIN (A:402-504)
5: ZF_DAG_PE_2 (A:515-564)
6: ZF_DAG_PE_1 (A:516-564)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CH
PS50021
Calponin homology domain profile.
VAV_HUMAN
1-119
0
-
2
DH_2
PS50010
Dbl homology (DH) domain profile.
VAV_HUMAN
194-373
1
A:194-373
-
3
DH_1
PS00741
Dbl homology (DH) domain signature.
VAV_HUMAN
322-347
1
A:322-347
-
4
PH_DOMAIN
PS50003
PH domain profile.
VAV_HUMAN
402-504
1
A:402-504
-
5
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
VAV_HUMAN
515-564
1
A:515-564
-
6
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
VAV_HUMAN
516-564
1
A:516-564
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_C1_1_3ky9B01 (B:516-565)
1b: PFAM_C1_1_3ky9B02 (B:516-565)
2a: PFAM_CH_3ky9B03 (B:4-119)
2b: PFAM_CH_3ky9B04 (B:4-119)
3a: PFAM_PH_3ky9B05 (B:403-504)
3b: PFAM_PH_3ky9B06 (B:403-504)
4a: PFAM_RhoGEF_3ky9B07 (B:198-372)
4b: PFAM_RhoGEF_3ky9B08 (B:198-372)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C1
(13)
Family
:
C1_1
(10)
Homo sapiens (Human)
(4)
1a
C1_1-3ky9B01
B:516-565
1b
C1_1-3ky9B02
B:516-565
Clan
:
CH
(43)
Family
:
CH
(43)
Homo sapiens (Human)
(31)
2a
CH-3ky9B03
B:4-119
2b
CH-3ky9B04
B:4-119
Clan
:
PH
(111)
Family
:
PH
(71)
Homo sapiens (Human)
(42)
3a
PH-3ky9B05
B:403-504
3b
PH-3ky9B06
B:403-504
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Homo sapiens (Human)
(16)
4a
RhoGEF-3ky9B07
B:198-372
4b
RhoGEF-3ky9B08
B:198-372
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Show PDB file:
Asym.Unit (394 KB)
Header - Asym.Unit
Biol.Unit 1 (193 KB)
Header - Biol.Unit 1
Biol.Unit 2 (196 KB)
Header - Biol.Unit 2
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