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3KY2
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE DOMAIN
Authors
:
J. H. Bae, T. J. Boggon, F. Tome, V. Mandiyan, I. Lax, J. Schlessinger
Date
:
04 Dec 09 (Deposition) - 02 Mar 10 (Release) - 02 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinase, Rtk, Phosphorylation, Interface, Alternative Splicing, Atp-Binding, Chromosomal Rearrangement, Craniosynostosis, Disease Mutation, Disulfide Bond, Dwarfism, Glycoprotein, Heparin-Binding, Hypogonadotropic Hypogonadism, Immunoglobulin Domain, Kallmann Syndrome, Membrane, Nucleotide-Binding, Phosphoprotein, Polymorphism, Receptor, Transferase, Transmembrane, Tyrosine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Bae, T. J. Boggon, F. Tome, V. Mandiyan, I. Lax, J. Schlessinger
Asymmetric Receptor Contact Is Required For Tyrosine Autophosphorylation Of Fibroblast Growth Factor Receptor In Living Cells.
Proc. Natl. Acad. Sci. Usa V. 107 2866 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:657 , ASN A:659 , ARG A:661
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
ARG A:570 , GLY A:660 , LEU A:662 , LYS A:665 , TRP A:666 , SER A:699
BINDING SITE FOR RESIDUE SO4 A 1002
3
AC3
SOFTWARE
ARG A:577 , SER A:584 , GLY A:698 , SER A:699 , HOH A:1036 , HIS B:717
BINDING SITE FOR RESIDUE SO4 A 1003
4
AC4
SOFTWARE
ARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:1028
BINDING SITE FOR RESIDUE SO4 B 1004
[
close Site info
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SAPs(SNPs)/Variants
(29, 58)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_069292 (R470L, chain A/B, )
02: VAR_069956 (P483T, chain A/B, )
03: VAR_070853 (G490R, chain A/B, )
04: VAR_030995 (A520T, chain A/B, )
05: VAR_030996 (I538V, chain A/B, )
06: VAR_017889 (V607M, chain A/B, )
07: VAR_069293 (K618N, chain A/B, )
08: VAR_030997 (H621R, chain A/B, )
09: VAR_030998 (R622G, chain A/B, )
10: VAR_030999 (R622Q, chain A/B, )
11: VAR_070854 (D623Y, chain A/B, )
12: VAR_071460 (R627T, chain A/B, )
13: VAR_070855 (N628K, chain A/B, )
14: VAR_042203 (V664L, chain A/B, )
15: VAR_017890 (W666R, chain A/B, )
16: VAR_069957 (E670K, chain A/B, )
17: VAR_069294 (A671P, chain A/B, )
18: VAR_031000 (S685F, chain A/B, )
19: VAR_031001 (G687R, chain A/B, )
20: VAR_069958 (E692G, chain A/B, )
21: VAR_031002 (I693F, chain A/B, )
22: VAR_031003 (G703R, chain A/B, )
23: VAR_031004 (G703S, chain A/B, )
24: VAR_017891 (M719R, chain A/B, )
25: VAR_031005 (P722H, chain A/B, )
26: VAR_031006 (P722S, chain A/B, )
27: VAR_031007 (N724K, chain A/B, )
28: VAR_070856 (C725Y, chain A/B, )
29: VAR_031008 (P745S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069292
R
470
L
FGFR1_HUMAN
Disease (HH2)
---
A/B
R
470
L
02
UniProt
VAR_069956
P
483
T
FGFR1_HUMAN
Disease (HH2)
---
A/B
P
483
T
03
UniProt
VAR_070853
G
490
R
FGFR1_HUMAN
Disease (HRTFDS)
---
A/B
G
490
R
04
UniProt
VAR_030995
A
520
T
FGFR1_HUMAN
Disease (HH2)
---
A/B
A
520
T
05
UniProt
VAR_030996
I
538
V
FGFR1_HUMAN
Disease (HH2)
---
A/B
I
538
V
06
UniProt
VAR_017889
V
607
M
FGFR1_HUMAN
Disease (HH2)
---
A/B
V
607
M
07
UniProt
VAR_069293
K
618
N
FGFR1_HUMAN
Disease (HH2)
---
A/B
K
618
N
08
UniProt
VAR_030997
H
621
R
FGFR1_HUMAN
Disease (HH2)
---
A/B
H
621
R
09
UniProt
VAR_030998
R
622
G
FGFR1_HUMAN
Disease (HH2)
---
A/B
R
622
G
10
UniProt
VAR_030999
R
622
Q
FGFR1_HUMAN
Disease (HH2)
---
A/B
R
622
Q
11
UniProt
VAR_070854
D
623
Y
FGFR1_HUMAN
Disease (HRTFDS)
---
A/B
D
623
Y
12
UniProt
VAR_071460
R
627
T
FGFR1_HUMAN
Disease (HRTFDS)
---
A/B
R
627
T
13
UniProt
VAR_070855
N
628
K
FGFR1_HUMAN
Disease (HRTFDS)
---
A/B
N
628
K
14
UniProt
VAR_042203
V
664
L
FGFR1_HUMAN
Unclassified
---
A/B
V
664
L
15
UniProt
VAR_017890
W
666
R
FGFR1_HUMAN
Disease (HH2)
---
A/B
W
666
R
16
UniProt
VAR_069957
E
670
K
FGFR1_HUMAN
Disease (HH2)
---
A/B
E
670
K
17
UniProt
VAR_069294
A
671
P
FGFR1_HUMAN
Disease (HH2)
---
A/B
A
671
P
18
UniProt
VAR_031000
S
685
F
FGFR1_HUMAN
Disease (HH2)
---
A/B
S
685
F
19
UniProt
VAR_031001
G
687
R
FGFR1_HUMAN
Disease (HH2)
---
A/B
G
687
R
20
UniProt
VAR_069958
E
692
G
FGFR1_HUMAN
Disease (HH2)
---
A/B
E
692
G
21
UniProt
VAR_031002
I
693
F
FGFR1_HUMAN
Disease (HH2)
---
A/B
I
693
F
22
UniProt
VAR_031003
G
703
R
FGFR1_HUMAN
Disease (HH2)
---
A/B
G
703
R
23
UniProt
VAR_031004
G
703
S
FGFR1_HUMAN
Disease (HH2)
---
A/B
G
703
S
24
UniProt
VAR_017891
M
719
R
FGFR1_HUMAN
Disease (HH2)
---
A/B
M
719
R
25
UniProt
VAR_031005
P
722
H
FGFR1_HUMAN
Disease (HH2)
---
A/B
P
722
H
26
UniProt
VAR_031006
P
722
S
FGFR1_HUMAN
Disease (HH2)
---
A/B
P
722
S
27
UniProt
VAR_031007
N
724
K
FGFR1_HUMAN
Disease (HH2)
---
A/B
N
724
K
28
UniProt
VAR_070856
C
725
Y
FGFR1_HUMAN
Disease (HRTFDS)
---
A/B
C
725
Y
29
UniProt
VAR_031008
P
745
S
FGFR1_HUMAN
Disease (HH2)
---
A/B
P
745
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:484-514,B:484-514)
2: PROTEIN_KINASE_TYR (A:619-631,B:619-631)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
FGFR1_HUMAN
484-514
2
A:484-514
B:484-514
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
FGFR1_HUMAN
619-631
2
A:619-631
B:619-631
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ky2a_ (A:)
1b: SCOP_d3ky2b_ (B:)
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Fibroblast growth factor receptor 1
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d3ky2a_
A:
1b
d3ky2b_
B:
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3ky2A01 (A:465-563)
1b: CATH_3ky2B01 (B:465-563)
2a: CATH_3ky2A02 (A:564-759)
2b: CATH_3ky2B02 (B:564-759)
View:
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Classes
(
)
(
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Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3ky2A01
A:465-563
1b
3ky2B01
B:465-563
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3ky2A02
A:564-759
2b
3ky2B02
B:564-759
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3ky2B01 (B:478-754)
1b: PFAM_Pkinase_Tyr_3ky2B02 (B:478-754)
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Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3ky2B01
B:478-754
1b
Pkinase_Tyr-3ky2B02
B:478-754
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (104 KB)
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