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Getting 'Biological Unit' information from database.
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3KXU
Biol. Unit 1
Info
Asym.Unit (38 KB)
Biol.Unit 1 (717 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FERRITIN FTL498INSTC PATHOGENIC MUTANT
Authors
:
T. Granier, B. Gallois, B. Langlois D'Estaintot, P. Arosio
Date
:
04 Dec 09 (Deposition) - 09 Feb 10 (Release) - 19 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
Iron Storage Protein, Disorder, Iron, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Luscieti, P. Santambrogio, B. Langlois D'Estaintot, T. Granier, A. Cozzi, M. Poli, B. Gallois, D. Finazzi, A. Cattaneo, S. Levi, P. Arosio
Mutant Ferritin L-Chains That Cause Neurodegeneration Act In A Dominant-Negative Manner To Reduce Ferritin Iron Incorporation.
J. Biol. Chem. V. 285 11948 2010
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
SO4
24
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:115 , CYS A:127 , HOH A:192 , HOH A:193 , HOH A:194 , HOH A:215
BINDING SITE FOR RESIDUE CD A 301
02
AC2
SOFTWARE
HIS A:50 , GLU A:54 , HOH A:220 , CD A:304
BINDING SITE FOR RESIDUE CD A 302
03
AC3
SOFTWARE
HIS A:50 , CD A:302
BINDING SITE FOR RESIDUE CD A 304
04
AC4
SOFTWARE
GLU A:54 , GLU A:57 , HOH A:221 , HOH A:222 , HOH A:223
BINDING SITE FOR RESIDUE CD A 305
05
AC5
SOFTWARE
GLU A:58 , GLU A:61 , HOH A:224 , HOH A:225
BINDING SITE FOR RESIDUE CD A 306
06
AC6
SOFTWARE
GLU A:89 , HOH A:226 , HOH A:227
BINDING SITE FOR RESIDUE CD A 308
07
AC7
SOFTWARE
HIS A:133 , HOH A:228 , HOH A:229 , HOH A:230 , HOH A:231 , HOH A:232
BINDING SITE FOR RESIDUE CD A 309
08
AC8
SOFTWARE
GLU A:87 , HOH A:233 , HOH A:234 , HOH A:235
BINDING SITE FOR RESIDUE CD A 312
09
AC9
SOFTWARE
CYS A:127 , ASP A:128 , GLU A:131
BINDING SITE FOR RESIDUE CD A 313
10
BC1
SOFTWARE
ASP A:128
BINDING SITE FOR RESIDUE CD A 314
11
BC2
SOFTWARE
ASP A:12 , HOH A:236 , HOH A:237
BINDING SITE FOR RESIDUE CD A 315
12
BC3
SOFTWARE
HIS A:153 , HOH A:238 , HOH A:239
BINDING SITE FOR RESIDUE CD A 316
13
BC4
SOFTWARE
SER A:10 , ASP A:12 , ARG A:121 , HOH A:237 , HOH A:345 , HOH A:346 , HOH A:381 , HOH A:419 , HOH A:423
BINDING SITE FOR RESIDUE SO4 A 317
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SAPs(SNPs)/Variants
(2, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_070948 (T30I, chain A, )
2: VAR_026633 (A96T, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070948
T
30
I
FRIL_HUMAN
Disease (HHCS)
---
A
T
30
I
2
UniProt
VAR_026633
A
96
T
FRIL_HUMAN
Disease (NBIA3)
---
A
A
96
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:7-156)
2: FERRITIN_1 (A:58-76)
3: FERRITIN_2 (A:123-143)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HUMAN
7-156
24
A:7-156
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HUMAN
58-76
24
A:58-76
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HUMAN
123-143
24
A:123-143
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kxua_ (A:)
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Protein Domains
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Organisms
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)
(
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3kxua_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ferritin_3kxuA01 (A:14-155)
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Clans
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)
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)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Homo sapiens (Human)
(3)
1a
Ferritin-3kxuA01
A:14-155
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
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Asym.Unit (38 KB)
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Biol.Unit 1 (717 KB)
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