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Getting 'Exon' information from database.
3KXF
Asym. Unit
Info
Asym.Unit (546 KB)
Biol.Unit 1 (143 KB)
Biol.Unit 2 (142 KB)
Biol.Unit 3 (142 KB)
Biol.Unit 4 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SB27 TCR IN COMPLEX WITH THE 'RESTRICTION TRIAD' MUTANT HLA-B*3508-13MER
Authors
:
J. K. Archbold, F. E. Tynan, S. Gras, J. Rossjohn
Date
:
03 Dec 09 (Deposition) - 09 Jun 10 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,D,E,Q (1x)
Biol. Unit 2: C,F,G,H,R (1x)
Biol. Unit 3: K,L,N,P,T (1x)
Biol. Unit 4: I,J,M,O,S (1x)
Keywords
:
Mhc, Hla, Tcr, Disulfide Bond, Host-Virus Interaction, Immune Response, Membrane, Mhc I, Transmembrane, Immunoglobulin Domain, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. R. Burrows, Z. Chen, J. K. Archbold, F. E. Tynan, T. Beddoe, L. Kjer-Nielsen, J. J. Miles, R. Khanna, D. J. Moss, Y. C. Liu, S. Gras, L. Kostenko, R. M. Brennan, C. S. Clements, A. G. Brooks, A. W. Purcell, J. Mccluskey, J. Rossjohn
Hard Wiring Of T Cell Receptor Specificity For The Major Histocompatibility Complex Is Underpinned By Tcr Adaptability
Proc. Natl. Acad. Sci. Usa V. 107 10608 2010
[
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
24
Ligand/Ion
IODIDE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:43
BINDING SITE FOR RESIDUE IOD A 277
02
AC2
SOFTWARE
THR A:178
BINDING SITE FOR RESIDUE IOD A 278
03
AC3
SOFTWARE
ARG A:62
BINDING SITE FOR RESIDUE IOD A 279
04
AC4
SOFTWARE
GLY B:43 , GLU B:77
BINDING SITE FOR RESIDUE IOD B 100
05
AC5
SOFTWARE
GLY I:16
BINDING SITE FOR RESIDUE IOD C 280
06
AC6
SOFTWARE
ARG E:226
BINDING SITE FOR RESIDUE IOD E 244
07
AC7
SOFTWARE
GLU F:77 , ALA F:79
BINDING SITE FOR RESIDUE IOD F 100
08
AC8
SOFTWARE
ARG A:17 , TRP K:51 , THR K:178
BINDING SITE FOR RESIDUE IOD K 278
09
AC9
SOFTWARE
PRO K:43
BINDING SITE FOR RESIDUE IOD K 279
10
BC1
SOFTWARE
ASN L:42 , GLY L:43
BINDING SITE FOR RESIDUE IOD L 100
11
BC2
SOFTWARE
SER P:196
BINDING SITE FOR RESIDUE IOD P 1
12
BC3
SOFTWARE
TRP I:51 , THR I:178
BINDING SITE FOR RESIDUE IOD I 278
13
BC4
SOFTWARE
ARG I:14 , GLY I:16 , ARG I:17 , GLY I:18
BINDING SITE FOR RESIDUE IOD I 280
14
BC5
SOFTWARE
ASN J:42 , GLY J:43
BINDING SITE FOR RESIDUE IOD J 100
[
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]
SAPs(SNPs)/Variants
(14, 56)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016393 (G16V, chain A/C/I/K, )
02: VAR_016394 (A24S, chain A/C/I/K, )
03: VAR_016395 (T45E, chain A/C/I/K, )
04: VAR_016396 (N63E, chain A/C/I/K, )
05: VAR_016397 (F67S, chain A/C/I/K, )
06: VAR_016398 (Y74D, chain A/C/I/K, )
07: VAR_016399 (G83D, chain A/C/I/K, )
08: VAR_016401 (R97S, chain A/C/I/K, )
09: VAR_016402 (L103V, chain A/C/I/K, )
10: VAR_016403 (L109F, chain A/C/I/K, )
11: VAR_016404 (D114N, chain A/C/I/K, )
12: VAR_016405 (S116F, chain A/C/I/K, )
13: VAR_016406 (S116Y, chain A/C/I/K, )
14: VAR_016407 (R156R, chain A/C/I/K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016393
G
40
V
1B35_HUMAN
Polymorphism
---
A/C/I/K
G
16
V
02
UniProt
VAR_016394
A
48
S
1B35_HUMAN
Polymorphism
---
A/C/I/K
A
24
S
03
UniProt
VAR_016395
T
69
E
1B35_HUMAN
Polymorphism
---
A/C/I/K
T
45
E
04
UniProt
VAR_016396
N
87
E
1B35_HUMAN
Polymorphism
---
A/C/I/K
N
63
E
05
UniProt
VAR_016397
F
91
S
1B35_HUMAN
Polymorphism
---
A/C/I/K
F
67
S
06
UniProt
VAR_016398
Y
98
D
1B35_HUMAN
Polymorphism
---
A/C/I/K
Y
74
D
07
UniProt
VAR_016399
G
107
D
1B35_HUMAN
Polymorphism
---
A/C/I/K
G
83
D
08
UniProt
VAR_016401
R
121
S
1B35_HUMAN
Polymorphism
---
A/C/I/K
R
97
S
09
UniProt
VAR_016402
L
127
V
1B35_HUMAN
Polymorphism
---
A/C/I/K
L
103
V
10
UniProt
VAR_016403
L
133
F
1B35_HUMAN
Polymorphism
---
A/C/I/K
L
109
F
11
UniProt
VAR_016404
D
138
N
1B35_HUMAN
Polymorphism
---
A/C/I/K
D
114
N
12
UniProt
VAR_016405
S
140
F
1B35_HUMAN
Polymorphism
---
A/C/I/K
S
116
F
13
UniProt
VAR_016406
S
140
Y
1B35_HUMAN
Polymorphism
---
A/C/I/K
S
116
Y
14
UniProt
VAR_016407
L
180
R
1B35_HUMAN
Polymorphism
---
A/C/I/K
R
156
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,F:78-84,J:78-84,L:78-84,A:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
4
B:78-84
F:78-84
J:78-84
L:78-84
1B35_HUMAN
281-287
4
A:257-263
C:257-263
I:257-263
K:257-263
[
close PROSITE info
]
Exons
(5, 20)
Info
All Exons
Exon 1.1b (A:1-1 | C:1-1 | I:1-1 | K:1-1)
Exon 1.1g (A:1-91 | C:1-91 | I:1-91 | K:1-91)
Exon 1.1k (A:91-183 | C:91-183 | I:91-183 | K...)
Exon 1.2e (A:183-275 | C:183-275 | I:183-275 ...)
Exon 1.3c (A:275-276 | C:275-276 | I:275-276 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.1g
3: Boundary 1.1g/1.1k
4: Boundary 1.1k/1.2e
5: Boundary 1.2e/1.3c
6: Boundary 1.3c/1.4d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000359635
1b
ENSE00001927439
HSCHR6_MHC_QBL:31315097-31314982
116
1B35_HUMAN
1-25
25
4
A:1-1
C:1-1
I:1-1
K:1-1
1
1
1
1
1.1g
ENST00000359635
1g
ENSE00001696140
HSCHR6_MHC_QBL:31314853-31314584
270
1B35_HUMAN
25-115
91
4
A:1-91
C:1-91
I:1-91
K:1-91
91
91
91
91
1.1k
ENST00000359635
1k
ENSE00001735604
HSCHR6_MHC_QBL:31314337-31314062
276
1B35_HUMAN
115-207
93
4
A:91-183
C:91-183
I:91-183
K:91-183
93
93
93
93
1.2e
ENST00000359635
2e
ENSE00001758727
HSCHR6_MHC_QBL:31313489-31313214
276
1B35_HUMAN
207-299
93
4
A:183-275
C:183-275
I:183-275
K:183-275
93
93
93
93
1.3c
ENST00000359635
3c
ENSE00001709629
HSCHR6_MHC_QBL:31313109-31312993
117
1B35_HUMAN
299-338
40
4
A:275-276
C:275-276
I:275-276
K:275-276
2
2
2
2
1.4d
ENST00000359635
4d
ENSE00001622787
HSCHR6_MHC_QBL:31312551-31312519
33
1B35_HUMAN
338-349
12
0
-
-
1.4e
ENST00000359635
4e
ENSE00001685892
HSCHR6_MHC_QBL:31312412-31312365
48
1B35_HUMAN
349-362
14
0
-
-
1.5b
ENST00000359635
5b
ENSE00001661687
HSCHR6_MHC_QBL:31312192-31311768
425
1B35_HUMAN
-
0
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3kxfA01 (A:1-181)
1b: CATH_3kxfC01 (C:1-181)
1c: CATH_3kxfI01 (I:1-181)
1d: CATH_3kxfK01 (K:1-181)
2a: CATH_3kxfB00 (B:1-99)
2b: CATH_3kxfF00 (F:1-99)
2c: CATH_3kxfJ00 (J:1-99)
2d: CATH_3kxfL00 (L:1-99)
2e: CATH_3kxfD01 (D:1-114)
2f: CATH_3kxfG01 (G:1-114)
2g: CATH_3kxfM01 (M:1-114)
2h: CATH_3kxfN01 (N:1-114)
2i: CATH_3kxfA02 (A:182-272)
2j: CATH_3kxfC02 (C:182-272)
2k: CATH_3kxfI02 (I:182-272)
2l: CATH_3kxfK02 (K:182-272)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
3kxfA01
A:1-181
1b
3kxfC01
C:1-181
1c
3kxfI01
I:1-181
1d
3kxfK01
K:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
3kxfB00
B:1-99
2b
3kxfF00
F:1-99
2c
3kxfJ00
J:1-99
2d
3kxfL00
L:1-99
2e
3kxfD01
D:1-114
2f
3kxfG01
G:1-114
2g
3kxfM01
M:1-114
2h
3kxfN01
N:1-114
2i
3kxfA02
A:182-272
2j
3kxfC02
C:182-272
2k
3kxfI02
I:182-272
2l
3kxfK02
K:182-272
[
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]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_C1_set_3kxfK01 (K:186-271)
1b: PFAM_C1_set_3kxfK02 (K:186-271)
1c: PFAM_C1_set_3kxfK03 (K:186-271)
1d: PFAM_C1_set_3kxfK04 (K:186-271)
1e: PFAM_C1_set_3kxfL01 (L:11-92)
1f: PFAM_C1_set_3kxfL02 (L:11-92)
1g: PFAM_C1_set_3kxfL03 (L:11-92)
1h: PFAM_C1_set_3kxfL04 (L:11-92)
2a: PFAM_MHC_I_3kxfK05 (K:1-179)
2b: PFAM_MHC_I_3kxfK06 (K:1-179)
2c: PFAM_MHC_I_3kxfK07 (K:1-179)
2d: PFAM_MHC_I_3kxfK08 (K:1-179)
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Organisms
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)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-3kxfK01
K:186-271
1b
C1-set-3kxfK02
K:186-271
1c
C1-set-3kxfK03
K:186-271
1d
C1-set-3kxfK04
K:186-271
1e
C1-set-3kxfL01
L:11-92
1f
C1-set-3kxfL02
L:11-92
1g
C1-set-3kxfL03
L:11-92
1h
C1-set-3kxfL04
L:11-92
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-3kxfK05
K:1-179
2b
MHC_I-3kxfK06
K:1-179
2c
MHC_I-3kxfK07
K:1-179
2d
MHC_I-3kxfK08
K:1-179
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