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3KXA
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NGO0477 FROM NEISSERIA GONORRHOEAE
Authors
:
J. Ren, S. Sainsbury, J. E. Nettleship, R. J. Owens, Oxford Protein Pr Facility (Oppf)
Date
:
02 Dec 09 (Deposition) - 19 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ngo0477, Neisseria Gonorrhoeae, New Protein Fold, Oppf, Structural Genomics, Oxford Protein Production Facility, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ren, S. Sainsbury, J. E. Nettleship, N. J. Saunders, R. J. Owens
The Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae Reveals A Novel Protein Fold Incorporating A Helix-Turn-Helix Motif.
Proteins V. 78 1798 2010
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Hetero Components
(4, 51)
Info
All Hetero Components
1a: ASPARAGINE (ASNa)
1b: ASPARAGINE (ASNb)
1c: ASPARAGINE (ASNc)
1d: ASPARAGINE (ASNd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
4i: UNKNOWN ATOM OR ION (UNXi)
4j: UNKNOWN ATOM OR ION (UNXj)
4k: UNKNOWN ATOM OR ION (UNXk)
4l: UNKNOWN ATOM OR ION (UNXl)
4m: UNKNOWN ATOM OR ION (UNXm)
4n: UNKNOWN ATOM OR ION (UNXn)
4o: UNKNOWN ATOM OR ION (UNXo)
4p: UNKNOWN ATOM OR ION (UNXp)
4q: UNKNOWN ATOM OR ION (UNXq)
4r: UNKNOWN ATOM OR ION (UNXr)
4s: UNKNOWN ATOM OR ION (UNXs)
4t: UNKNOWN ATOM OR ION (UNXt)
4u: UNKNOWN ATOM OR ION (UNXu)
4v: UNKNOWN ATOM OR ION (UNXv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASN
4
Mod. Amino Acid
ASPARAGINE
2
CL
13
Ligand/Ion
CHLORIDE ION
3
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
4
UNX
22
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:7 , LEU A:9 , LYS A:16 , VAL A:18
BINDING SITE FOR RESIDUE ASN A 140
02
AC2
SOFTWARE
LEU B:9 , LYS B:16 , VAL B:18 , LYS B:19
BINDING SITE FOR RESIDUE ASN B 140
03
AC3
SOFTWARE
LYS C:7 , LEU C:9 , LYS C:16 , CYS C:17 , VAL C:18 , LYS C:19
BINDING SITE FOR RESIDUE ASN C 140
04
AC4
SOFTWARE
LEU D:9 , LYS D:16 , VAL D:18 , LYS D:19
BINDING SITE FOR RESIDUE ASN D 140
05
AC5
SOFTWARE
LYS A:42
BINDING SITE FOR RESIDUE CL A 134
06
AC6
SOFTWARE
MSE A:70
BINDING SITE FOR RESIDUE CL A 135
07
AC7
SOFTWARE
LEU A:117 , ASN C:110
BINDING SITE FOR RESIDUE CL A 136
08
AC8
SOFTWARE
MSE A:130 , LYS D:7
BINDING SITE FOR RESIDUE CL A 137
09
AC9
SOFTWARE
ARG A:92 , SER A:96
BINDING SITE FOR RESIDUE CL A 138
10
BC1
SOFTWARE
LYS B:7 , MSE C:130
BINDING SITE FOR RESIDUE CL B 134
11
BC2
SOFTWARE
MSE B:70
BINDING SITE FOR RESIDUE CL B 135
12
BC3
SOFTWARE
MSE C:70
BINDING SITE FOR RESIDUE CL C 134
13
BC4
SOFTWARE
ASN A:110 , LEU C:117
BINDING SITE FOR RESIDUE CL C 135
14
BC5
SOFTWARE
MSE D:70
BINDING SITE FOR RESIDUE CL C 136
15
BC6
SOFTWARE
LYS C:42
BINDING SITE FOR RESIDUE CL C 137
16
BC7
SOFTWARE
ARG C:92
BINDING SITE FOR RESIDUE CL C 138
17
BC8
SOFTWARE
LYS C:97 , GLN C:98 , SER C:99
BINDING SITE FOR RESIDUE CL C 139
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_HTH_3_3kxaD01 (D:59-111)
1b: PFAM_HTH_3_3kxaD02 (D:59-111)
1c: PFAM_HTH_3_3kxaD03 (D:59-111)
1d: PFAM_HTH_3_3kxaD04 (D:59-111)
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Clan
:
HTH
(544)
Family
:
HTH_3
(27)
Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
(1)
1a
HTH_3-3kxaD01
D:59-111
1b
HTH_3-3kxaD02
D:59-111
1c
HTH_3-3kxaD03
D:59-111
1d
HTH_3-3kxaD04
D:59-111
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Asymmetric Unit 1
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Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
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