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3KX2
Biol. Unit 1
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Asym.Unit (543 KB)
Biol.Unit 1 (271 KB)
Biol.Unit 2 (269 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PRP43P IN COMPLEX WITH ADP
Authors
:
K. H. Nielsen, G. R. Andersen, Y. He
Date
:
02 Dec 09 (Deposition) - 26 Jan 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Keywords
:
Rec-A Domains, Ob Fold, Winged-Helix Domain, Atp-Binding, Mrna Processing, Mrna Splicing, Nucleotide-Binding, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. He, G. R. Andersen, K. H. Nielsen
Structural Basis For The Function Of Deah Helicases
Embo Rep. V. 11 180 2010
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR B:123 , SER B:382 , HOH B:901 , HOH B:902 , HOH B:903 , HOH B:904 , ADP B:1000
BINDING SITE FOR RESIDUE MG B 800
2
AC2
SOFTWARE
LEU B:93 , GLU B:117 , THR B:118 , GLY B:119 , SER B:120 , GLY B:121 , LYS B:122 , THR B:123 , THR B:124 , ARG B:159 , PHE B:357 , THR B:384 , ASP B:386 , ARG B:430 , MG B:800 , HOH B:811 , HOH B:836 , HOH B:901 , HOH B:902 , HOH B:903 , HOH B:985 , HOH B:1162 , HOH B:1167
BINDING SITE FOR RESIDUE ADP B 1000
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DEAH_ATP_HELICASE (B:210-219)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEAH_ATP_HELICASE
PS00690
DEAH-box subfamily ATP-dependent helicases signature.
PRP43_YEAST
210-219
1
-
B:210-219
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_OB_NTP_bind_3kx2B01 (B:621-725)
1b: PFAM_OB_NTP_bind_3kx2B02 (B:621-725)
2a: PFAM_DEAD_3kx2B03 (B:95-258)
2b: PFAM_DEAD_3kx2B04 (B:95-258)
3a: PFAM_Helicase_C_3kx2B05 (B:337-432)
3b: PFAM_Helicase_C_3kx2B06 (B:337-432)
4a: PFAM_HA2_3kx2B07 (B:493-583)
4b: PFAM_HA2_3kx2B08 (B:493-583)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
OB
(224)
Family
:
OB_NTP_bind
(2)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
1a
OB_NTP_bind-3kx2B01
B:621-725
1b
OB_NTP_bind-3kx2B02
B:621-725
Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
DEAD-3kx2B03
B:95-258
2b
DEAD-3kx2B04
B:95-258
Family
:
Helicase_C
(51)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(14)
3a
Helicase_C-3kx2B05
B:337-432
3b
Helicase_C-3kx2B06
B:337-432
Clan
:
no clan defined [family: HA2]
(2)
Family
:
HA2
(2)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
4a
HA2-3kx2B07
B:493-583
4b
HA2-3kx2B08
B:493-583
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Asym.Unit (543 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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