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3KWO
Biol. Unit 1
Info
Asym.Unit (226 KB)
Biol.Unit 1 (639 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE BACTERIOFERRITIN FROM CAMPYLOBACTER JEJUNI
Authors
:
Y. Kim, M. Gu, L. Papazisi, W. Anderson, A. Joachimiak
Date
:
01 Dec 09 (Deposition) - 19 Jan 10 (Release) - 19 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Alpha-Helix, Bacterial Ferritin Fold, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Cytoplasm, Iron, Iron Storage, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, M. Gu, L. Papazisi, W. Anderson, A. Joachimiak
Crystal Structure Of Putative Bacterioferritin From Campylobacter Jejuni
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 147)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
1n: ACETIC ACID (ACYn)
1o: ACETIC ACID (ACYo)
1p: ACETIC ACID (ACYp)
1q: ACETIC ACID (ACYq)
1r: ACETIC ACID (ACYr)
1s: ACETIC ACID (ACYs)
1t: ACETIC ACID (ACYt)
1u: ACETIC ACID (ACYu)
1v: ACETIC ACID (ACYv)
1w: ACETIC ACID (ACYw)
1x: ACETIC ACID (ACYx)
2a: 1,4-BUTANEDIOL (BU1a)
2b: 1,4-BUTANEDIOL (BU1b)
2c: 1,4-BUTANEDIOL (BU1c)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
5y: ZINC ION (ZNy)
5z: ZINC ION (ZNz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
72
Ligand/Ion
ACETIC ACID
2
BU1
9
Ligand/Ion
1,4-BUTANEDIOL
3
GOL
6
Ligand/Ion
GLYCEROL
4
MSE
60
Mod. Amino Acid
SELENOMETHIONINE
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(55, 55)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:90 , GLU A:93 , ACY A:159 , ZN A:164 , HOH A:363 , GLU D:93
BINDING SITE FOR RESIDUE ACY A 151
02
AC2
SOFTWARE
MSE A:73 , ACY A:154 , GLN C:69 , ZN C:165
BINDING SITE FOR RESIDUE ACY A 150
03
AC3
SOFTWARE
GLU A:38 , GLU A:41 , GLU A:45 , ACY A:153 , ZN A:163
BINDING SITE FOR RESIDUE ACY A 152
04
AC4
SOFTWARE
GLU A:38 , GLU A:41 , ACY A:152 , ZN A:162 , ACY B:154
BINDING SITE FOR RESIDUE ACY A 153
05
AC5
SOFTWARE
HIS A:16 , VAL A:19 , ACY A:150 , HOH A:201 , THR C:67 , CYS C:68 , GLN C:69 , ACY C:152 , ZN C:165
BINDING SITE FOR RESIDUE ACY A 154
06
AC6
SOFTWARE
THR A:67 , CYS A:68 , GLN A:69 , ZN A:165 , HOH A:291 , HIS C:16 , LYS C:20
BINDING SITE FOR RESIDUE ACY A 155
07
AC7
SOFTWARE
ASP A:84 , HOH A:274 , HOH A:541 , CYS B:147 , ZN B:167 , LYS C:64
BINDING SITE FOR RESIDUE ACY A 157
08
AC8
SOFTWARE
THR A:142 , PHE C:34 , HOH C:547
BINDING SITE FOR RESIDUE ACY A 158
09
AC9
SOFTWARE
LEU A:89 , GLU A:93 , ACY A:151 , ZN A:164 , GLU D:93
BINDING SITE FOR RESIDUE ACY A 159
10
BC1
SOFTWARE
LEU A:31 , PHE A:33 , PHE A:34 , HOH A:186 , THR B:142 , BU1 B:155 , HOH B:181
BINDING SITE FOR RESIDUE GOL A 160
11
BC2
SOFTWARE
HIS A:37 , ZN A:162 , HOH A:371 , MSE B:138 , ACY B:154 , HOH B:198 , ZN C:164
BINDING SITE FOR RESIDUE ZN A 161
12
BC3
SOFTWARE
GLU A:38 , GLU A:41 , ACY A:153 , ZN A:161 , ACY B:154
BINDING SITE FOR RESIDUE ZN A 162
13
BC4
SOFTWARE
GLU A:45 , ACY A:152 , HOH A:207 , HOH A:447
BINDING SITE FOR RESIDUE ZN A 163
14
BC5
SOFTWARE
ASP A:52 , GLU A:56 , HOH A:444 , HIS C:25 , TYR C:44 , ZN C:162
BINDING SITE FOR RESIDUE ZN A 156
15
BC6
SOFTWARE
GLU A:93 , ACY A:151 , ACY A:159 , GLU D:93
BINDING SITE FOR RESIDUE ZN A 164
16
BC7
SOFTWARE
CYS A:68 , ACY A:155 , HOH A:189 , HOH A:530
BINDING SITE FOR RESIDUE ZN A 165
17
BC8
SOFTWARE
GLU A:111 , GLU D:111 , GLU D:114 , ACY D:151
BINDING SITE FOR RESIDUE ZN A 167
18
BC9
SOFTWARE
CYS A:147 , HOH A:524 , CYS C:85 , HOH C:525 , HOH C:540
BINDING SITE FOR RESIDUE ZN A 168
19
CC1
SOFTWARE
GLU B:38 , GLU B:41 , GLU B:45 , ACY B:153 , ZN B:164
BINDING SITE FOR RESIDUE ACY B 151
20
CC2
SOFTWARE
THR B:67 , CYS B:68 , GLN B:69 , ZN B:165 , HOH B:212 , HIS D:16
BINDING SITE FOR RESIDUE ACY B 152
21
CC3
SOFTWARE
PHE A:34 , HIS A:37 , GLU A:38 , GLU A:41 , ACY A:153 , ZN A:161 , ZN A:162 , LYS B:134 , MSE B:138 , HOH B:198
BINDING SITE FOR RESIDUE ACY B 154
22
CC4
SOFTWARE
GLU B:38 , GLU B:41 , ACY B:151 , ZN B:161
BINDING SITE FOR RESIDUE ACY B 153
23
CC5
SOFTWARE
LYS B:96 , GLN B:97 , GLU B:100 , HOH B:522 , HOH B:538
BINDING SITE FOR RESIDUE GOL B 150
24
CC6
SOFTWARE
LEU A:31 , GOL A:160 , SER B:35 , ILE B:36 , TYR B:39 , HOH B:271 , HOH B:317
BINDING SITE FOR RESIDUE BU1 B 155
25
CC7
SOFTWARE
GLU B:38 , GLU B:41 , ACY B:153 , ZN B:162 , HOH B:225
BINDING SITE FOR RESIDUE ZN B 161
26
CC8
SOFTWARE
HIS B:37 , ZN B:161 , ZN B:163 , HOH B:206 , HOH B:225 , HOH D:402
BINDING SITE FOR RESIDUE ZN B 162
27
CC9
SOFTWARE
HIS B:25 , TYR B:44 , ZN B:162 , ASP D:52 , GLU D:56 , HOH D:402
BINDING SITE FOR RESIDUE ZN B 163
28
DC1
SOFTWARE
GLU B:45 , ACY B:151 , HOH B:261 , HOH B:476
BINDING SITE FOR RESIDUE ZN B 164
29
DC2
SOFTWARE
CYS B:68 , ACY B:152 , HOH B:193 , HOH B:527
BINDING SITE FOR RESIDUE ZN B 165
30
DC3
SOFTWARE
CYS B:85 , HOH B:521 , CYS C:147 , HOH C:520
BINDING SITE FOR RESIDUE ZN B 166
31
DC4
SOFTWARE
CYS A:85 , ACY A:157 , HOH A:215 , CYS B:147 , HOH B:418
BINDING SITE FOR RESIDUE ZN B 167
32
DC5
SOFTWARE
VAL A:81 , ACY A:154 , CYS C:68 , ZN C:165
BINDING SITE FOR RESIDUE ACY C 152
33
DC6
SOFTWARE
GLU C:38 , GLU C:41 , ACY C:155 , ACY C:156 , ZN C:161
BINDING SITE FOR RESIDUE ACY C 154
34
DC7
SOFTWARE
LYS A:134 , HOH A:198 , PHE C:34 , GLU C:38 , GLU C:41 , ACY C:154 , ZN C:161 , ZN C:162
BINDING SITE FOR RESIDUE ACY C 155
35
DC8
SOFTWARE
GLU C:38 , GLU C:41 , GLU C:45 , ACY C:154 , ZN C:166
BINDING SITE FOR RESIDUE ACY C 156
36
DC9
SOFTWARE
GLU C:38 , GLU C:41 , ACY C:154 , ACY C:155 , ZN C:162
BINDING SITE FOR RESIDUE ZN C 161
37
EC1
SOFTWARE
ZN A:156 , HOH A:198 , HOH A:444 , HIS C:37 , ACY C:155 , ZN C:161
BINDING SITE FOR RESIDUE ZN C 162
38
EC2
SOFTWARE
HIS A:25 , TYR A:44 , ZN A:161 , HOH A:371 , ASP C:52 , GLU C:56
BINDING SITE FOR RESIDUE ZN C 164
39
EC3
SOFTWARE
ACY A:150 , ACY A:154 , CYS C:68 , ACY C:152
BINDING SITE FOR RESIDUE ZN C 165
40
EC4
SOFTWARE
GLU C:45 , ACY C:156 , HOH C:194 , HOH C:453
BINDING SITE FOR RESIDUE ZN C 166
41
EC5
SOFTWARE
GLU A:111 , LYS A:115 , ZN A:167 , HOH A:184 , SER B:117 , HOH B:192 , GLU D:111 , GLU D:114
BINDING SITE FOR RESIDUE ACY D 151
42
EC6
SOFTWARE
GLU D:38 , GLU D:41 , ACY D:153 , ZN D:163 , HOH D:567
BINDING SITE FOR RESIDUE ACY D 152
43
EC7
SOFTWARE
GLU D:38 , GLU D:41 , LYS D:42 , ACY D:152 , ZN D:163 , ZN D:165
BINDING SITE FOR RESIDUE ACY D 153
44
EC8
SOFTWARE
GLU B:56 , HIS D:37 , LYS D:134 , TRP D:137 , ZN D:161 , ZN D:162 , HOH D:167 , HOH D:326
BINDING SITE FOR RESIDUE ACY D 154
45
EC9
SOFTWARE
HIS B:16 , VAL B:19 , LYS B:20 , HOH B:386 , THR D:67 , CYS D:68 , GLN D:69 , ACY D:156 , ZN D:164
BINDING SITE FOR RESIDUE ACY D 155
46
FC1
SOFTWARE
GLN D:69 , ACY D:155 , ZN D:164
BINDING SITE FOR RESIDUE ACY D 156
47
FC2
SOFTWARE
ALA A:82 , CYS D:147 , ZN D:166 , HOH D:517 , HOH D:559
BINDING SITE FOR RESIDUE ACY D 157
48
FC3
SOFTWARE
LEU D:31 , GLN D:32 , PHE D:33 , PHE D:34 , THR D:142 , BU1 D:159 , HOH D:234
BINDING SITE FOR RESIDUE BU1 D 158
49
FC4
SOFTWARE
LEU D:31 , SER D:35 , BU1 D:158 , HOH D:500
BINDING SITE FOR RESIDUE BU1 D 159
50
FC5
SOFTWARE
HIS D:37 , ACY D:154 , ZN D:162 , ZN D:163 , HOH D:167 , HOH D:326
BINDING SITE FOR RESIDUE ZN D 161
51
FC6
SOFTWARE
ASP B:52 , GLU B:56 , HIS D:25 , TYR D:44 , ACY D:154 , ZN D:161 , HOH D:326
BINDING SITE FOR RESIDUE ZN D 162
52
FC7
SOFTWARE
GLU D:38 , GLU D:41 , ACY D:152 , ACY D:153 , ZN D:161 , HOH D:167
BINDING SITE FOR RESIDUE ZN D 163
53
FC8
SOFTWARE
CYS D:68 , ACY D:155 , ACY D:156 , HOH D:531
BINDING SITE FOR RESIDUE ZN D 164
54
FC9
SOFTWARE
GLU D:45 , ACY D:153 , HOH D:282
BINDING SITE FOR RESIDUE ZN D 165
55
GC1
SOFTWARE
CYS D:85 , CYS D:147 , ACY D:157 , HOH D:517 , HOH D:518
BINDING SITE FOR RESIDUE ZN D 166
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3kwoa_ (A:)
1b: SCOP_d3kwob_ (B:)
1c: SCOP_d3kwoc_ (C:)
1d: SCOP_d3kwod_ (D:)
View:
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Classes
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Folds
(
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(
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Superfamilies
(
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(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Campylobacter jejuni [TaxId: 192222]
(1)
1a
d3kwoa_
A:
1b
d3kwob_
B:
1c
d3kwoc_
C:
1d
d3kwod_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3kwoA00 (A:-1-147)
1b: CATH_3kwoD00 (D:0-147)
1c: CATH_3kwoB00 (B:2-147)
1d: CATH_3kwoC00 (C:2-147)
View:
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Campylobacter jejuni. Organism_taxid: 192222. Strain: nctc 11168.
(1)
1a
3kwoA00
A:-1-147
1b
3kwoD00
D:0-147
1c
3kwoB00
B:2-147
1d
3kwoC00
C:2-147
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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