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3KWM
Asym. Unit
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Asym.Unit (154 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBOSE-5-ISOMERASE A
Authors
:
M. Orlikowska, R. Rostankowski, C. Nakka, J. Hattne, S. Grimshaw, D. Bo Z. Otwinowski, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
01 Dec 09 (Deposition) - 05 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Isomerase, Structural Genomics, Idp02119, Center For Structural Genomics Of Infectious Diseases, Csgid
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Reference
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: GLYCERALDEHYDE (3GRa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
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No.
Name
Count
Type
Full Name
1
3GR
1
Ligand/Ion
GLYCERALDEHYDE
2
NA
2
Ligand/Ion
SODIUM ION
3
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:198 , VAL A:199 , HOH A:241 , VAL D:198 , VAL D:199 , HOH D:234
BINDING SITE FOR RESIDUE NA A 225
02
AC2
SOFTWARE
SER A:36 , THR A:37 , LYS A:127 , HOH A:240 , HOH A:260 , HOH A:261
BINDING SITE FOR RESIDUE PO4 A 226
03
AC3
SOFTWARE
VAL B:198 , VAL B:199 , VAL C:198 , VAL C:199
BINDING SITE FOR RESIDUE NA B 225
04
AC4
SOFTWARE
LYS B:13 , SER B:36 , THR B:37 , LYS B:127 , HOH B:254 , HOH B:287
BINDING SITE FOR RESIDUE PO4 B 226
05
AC5
SOFTWARE
GLN C:165 , ILE C:167 , ASP C:169
BINDING SITE FOR RESIDUE PEG C 225
06
AC6
SOFTWARE
GLY C:39 , GLU C:43 , LYS C:65 , HOH C:277
BINDING SITE FOR RESIDUE PEG C 226
07
AC7
SOFTWARE
TYR C:162 , HOH C:242
BINDING SITE FOR RESIDUE PEG C 227
08
AC8
SOFTWARE
ASN C:134 , GLN C:159
BINDING SITE FOR RESIDUE PEG C 228
09
AC9
SOFTWARE
GLY D:35 , ALA D:89 , ASP D:90 , LYS D:100 , GLY D:101 , GLY D:102 , GLY D:103 , PO4 D:226 , HOH D:277
BINDING SITE FOR RESIDUE 3GR D 225
10
BC1
SOFTWARE
LYS D:13 , SER D:36 , THR D:37 , ALA D:89 , LYS D:127 , 3GR D:225 , HOH D:289 , HOH D:300
BINDING SITE FOR RESIDUE PO4 D 226
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3kwmA02 (A:131-202)
1b: CATH_3kwmB02 (B:131-202)
1c: CATH_3kwmC02 (C:131-202)
1d: CATH_3kwmD02 (D:131-202)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.260, no name defined]
(34)
Tularensis (Francisella tularensis subsp)
(1)
1a
3kwmA02
A:131-202
1b
3kwmB02
B:131-202
1c
3kwmC02
C:131-202
1d
3kwmD02
D:131-202
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Rib_5_P_isom_A_3kwmD01 (D:53-221)
1b: PFAM_Rib_5_P_isom_A_3kwmD02 (D:53-221)
1c: PFAM_Rib_5_P_isom_A_3kwmD03 (D:53-221)
1d: PFAM_Rib_5_P_isom_A_3kwmD04 (D:53-221)
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Clan
:
ISOCOT_Fold
(53)
Family
:
Rib_5-P_isom_A
(10)
Francisella tularensis subsp. tularensis
(1)
1a
Rib_5-P_isom_A-3kwmD01
D:53-221
1b
Rib_5-P_isom_A-3kwmD02
D:53-221
1c
Rib_5-P_isom_A-3kwmD03
D:53-221
1d
Rib_5-P_isom_A-3kwmD04
D:53-221
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Asymmetric Unit 1
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Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
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