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3KW7
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACB FROM TRAMETES SP. AH28-2
Authors
:
H. H. Ge, M. K. Teng, L. W. Niu
Date
:
01 Dec 09 (Deposition) - 09 Mar 10 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.44
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Laccase, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. H. Ge, Y. X. Gao, Y. Z. Hong, M. Zhang, Y. Z. Xiao, M. K. Teng, L. W. Niu
Structure Of Native Laccase B From Trametes Sp. Ah28-2
Acta Crystallogr. , Sect. F V. 66 254 2010
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close entry info
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
8
Ligand/Ion
COPPER (II) ION
2
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:400 , CYS A:456 , ILE A:458 , HIS A:461
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:403 , HIS A:405
BINDING SITE FOR RESIDUE CU A 602
03
AC3
SOFTWARE
HIS A:111 , HIS A:405 , HIS A:455
BINDING SITE FOR RESIDUE CU A 603
04
AC4
SOFTWARE
HIS A:66 , TRP A:107 , HIS A:109 , HIS A:457
BINDING SITE FOR RESIDUE CU A 604
05
AC5
SOFTWARE
ASN A:217 , ASP A:234 , GLN A:252
BINDING SITE FOR RESIDUE NAG A 701
06
AC6
SOFTWARE
ALA A:23 , ASN A:54 , MET A:57 , NAG A:703
BINDING SITE FOR RESIDUE NAG A 702
07
AC7
SOFTWARE
ARG A:22 , HIS A:153 , ALA A:155 , LEU A:158 , NAG A:702
BINDING SITE FOR RESIDUE NAG A 703
08
AC8
SOFTWARE
ASN A:439 , NAG A:705
BINDING SITE FOR RESIDUE NAG A 704
09
AC9
SOFTWARE
ASN A:327 , HOH A:510 , HOH A:511 , HOH A:519 , NAG A:704
BINDING SITE FOR RESIDUE NAG A 705
10
BC1
SOFTWARE
ASN A:333 , THR A:335 , ASN A:336 , PHE A:338 , HOH A:516
BINDING SITE FOR RESIDUE NAG A 706
11
BC2
SOFTWARE
HIS B:400 , CYS B:456 , ILE B:458 , HIS B:461
BINDING SITE FOR RESIDUE CU B 601
12
BC3
SOFTWARE
HIS B:64 , HIS B:403 , HIS B:405
BINDING SITE FOR RESIDUE CU B 602
13
BC4
SOFTWARE
HIS B:111 , HIS B:405 , HIS B:455
BINDING SITE FOR RESIDUE CU B 603
14
BC5
SOFTWARE
HIS B:66 , TRP B:107 , HIS B:109 , HIS B:457
BINDING SITE FOR RESIDUE CU B 604
15
BC6
SOFTWARE
ALA B:23 , ASN B:54 , MET B:57 , ALA B:155 , NAG B:702
BINDING SITE FOR RESIDUE NAG B 701
16
BC7
SOFTWARE
ARG B:22 , HIS B:153 , ALA B:155 , LEU B:158 , HOH B:506 , NAG B:701
BINDING SITE FOR RESIDUE NAG B 702
17
BC8
SOFTWARE
ASN B:439 , NAG B:704
BINDING SITE FOR RESIDUE NAG B 703
18
BC9
SOFTWARE
ASN B:327 , HOH B:508 , HOH B:509 , HOH B:510 , NAG B:703
BINDING SITE FOR RESIDUE NAG B 704
19
CC1
SOFTWARE
GLY B:215 , HIS B:216 , ASN B:217 , GLN B:252 , ILE B:298
BINDING SITE FOR RESIDUE NAG B 705
20
CC2
SOFTWARE
ASN B:333 , THR B:335
BINDING SITE FOR RESIDUE NAG B 706
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3kw7A01 (A:1-132)
1b: CATH_3kw7B01 (B:1-132)
1c: CATH_3kw7A02 (A:133-309)
1d: CATH_3kw7B02 (B:133-309)
1e: CATH_3kw7A03 (A:310-502)
1f: CATH_3kw7B03 (B:310-502)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Trametes. Organism_taxid: 306582. Strain: ah28-2
(1)
1a
3kw7A01
A:1-132
1b
3kw7B01
B:1-132
1c
3kw7A02
A:133-309
1d
3kw7B02
B:133-309
1e
3kw7A03
A:310-502
1f
3kw7B03
B:310-502
[
close CATH info
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_3kw7B01 (B:142-284)
1b: PFAM_Cu_oxidase_3kw7B02 (B:142-284)
2a: PFAM_Cu_oxidase_2_3kw7B03 (B:344-476)
2b: PFAM_Cu_oxidase_2_3kw7B04 (B:344-476)
3a: PFAM_Cu_oxidase_3_3kw7B05 (B:9-131)
3b: PFAM_Cu_oxidase_3_3kw7B06 (B:9-131)
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Clans
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)
(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Trametes sp. AH28-2
(1)
1a
Cu-oxidase-3kw7B01
B:142-284
1b
Cu-oxidase-3kw7B02
B:142-284
Family
:
Cu-oxidase_2
(24)
Trametes sp. AH28-2
(1)
2a
Cu-oxidase_2-3kw7B03
B:344-476
2b
Cu-oxidase_2-3kw7B04
B:344-476
Family
:
Cu-oxidase_3
(79)
Trametes sp. AH28-2
(1)
3a
Cu-oxidase_3-3kw7B05
B:9-131
3b
Cu-oxidase_3-3kw7B06
B:9-131
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
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