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3KUQ
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DLC1 RHOGAP DOMAIN
Authors
:
L. Nedyalkova, W. Tempel, Y. Tong, F. Mackenzie, L. Shen, N. Zhong, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date
:
27 Nov 09 (Deposition) - 26 Jan 10 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics Consortium, Gtpase Activation, Sgc, Alternative Splicing, Cytoplasm, Phosphoprotein, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Nedyalkova, W. Tempel, Y. Tong, F. Mackenzie, L. Shen, N. Zhong, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Dlc1 Rhogap Domain
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: UNKNOWN ATOM OR ION (UNXa)
1b: UNKNOWN ATOM OR ION (UNXb)
1c: UNKNOWN ATOM OR ION (UNXc)
1d: UNKNOWN ATOM OR ION (UNXd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
UNX
4
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014234 (E1199V, chain A, )
2: VAR_014235 (S1209C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014234
E
1199
V
RHG07_HUMAN
Polymorphism
1044093
A
E
1199
V
2
UniProt
VAR_014235
S
1209
C
RHG07_HUMAN
Polymorphism
1044094
A
S
1209
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHOGAP (A:1078-1279)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHOGAP
PS50238
Rho GTPase-activating proteins domain profile.
RHG07_HUMAN
1078-1284
1
A:1078-1279
[
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Exons
(4, 4)
Info
All Exons
Exon 1.18 (A:1069-1109)
Exon 1.19c (A:1110-1176)
Exon 1.20 (A:1176-1239)
Exon 1.21 (A:1259-1279)
View:
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All Exon Boundaries
1: Boundary 1.16/1.18
2: Boundary 1.18/1.19c
3: Boundary 1.19c/1.20
4: Boundary 1.20/1.21
5: Boundary 1.21/1.22
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000276297
2b
ENSE00001189213
chr8:
13372395-13372111
285
RHG07_HUMAN
-
0
0
-
-
1.3b
ENST00000276297
3b
ENSE00001388926
chr8:
13357705-13356558
1148
RHG07_HUMAN
1-341
341
0
-
-
1.4
ENST00000276297
4
ENSE00000979612
chr8:
13259128-13258979
150
RHG07_HUMAN
342-391
50
0
-
-
1.5b
ENST00000276297
5b
ENSE00001015479
chr8:
13251202-13251062
141
RHG07_HUMAN
392-438
47
0
-
-
1.6a
ENST00000276297
6a
ENSE00001087081
chr8:
13162811-13162778
34
RHG07_HUMAN
439-450
12
0
-
-
1.12
ENST00000276297
12
ENSE00001189219
chr8:
12973166-12973095
72
RHG07_HUMAN
450-474
25
0
-
-
1.13
ENST00000276297
13
ENSE00001087061
chr8:
12968332-12968251
82
RHG07_HUMAN
474-501
28
0
-
-
1.14
ENST00000276297
14
ENSE00001087065
chr8:
12960362-12960299
64
RHG07_HUMAN
501-522
22
0
-
-
1.15e
ENST00000276297
15e
ENSE00001087057
chr8:
12958279-12956856
1424
RHG07_HUMAN
523-997
475
0
-
-
1.16
ENST00000276297
16
ENSE00001087059
chr8:
12956084-12955908
177
RHG07_HUMAN
997-1056
60
0
-
-
1.18
ENST00000276297
18
ENSE00001087055
chr8:
12952754-12952595
160
RHG07_HUMAN
1056-1109
54
1
A:1069-1109
41
1.19c
ENST00000276297
19c
ENSE00001087071
chr8:
12952466-12952268
199
RHG07_HUMAN
1110-1176
67
1
A:1110-1176
67
1.20
ENST00000276297
20
ENSE00001087051
chr8:
12950334-12950121
214
RHG07_HUMAN
1176-1247
72
1
A:1176-1239
64
1.21
ENST00000276297
21
ENSE00001087050
chr8:
12948941-12948827
115
RHG07_HUMAN
1247-1285
39
1
A:1259-1279
21
1.22
ENST00000276297
22
ENSE00001087069
chr8:
12947979-12947761
219
RHG07_HUMAN
1286-1358
73
0
-
-
1.23b
ENST00000276297
23b
ENSE00001087054
chr8:
12946213-12945996
218
RHG07_HUMAN
1359-1431
73
0
-
-
1.24a
ENST00000276297
24a
ENSE00001087052
chr8:
12943972-12943799
174
RHG07_HUMAN
1431-1489
59
0
-
-
1.25e
ENST00000276297
25e
ENSE00001216909
chr8:
12943440-12940870
2571
RHG07_HUMAN
1489-1528
40
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RhoGAP_3kuqA01 (A:1092-1239)
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Clan
:
GAP
(15)
Family
:
RhoGAP
(12)
Homo sapiens (Human)
(12)
1a
RhoGAP-3kuqA01
A:1092-1239
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Asym.Unit (36 KB)
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