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3KUL
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
KINASE DOMAIN OF HUMAN EPHRIN TYPE-A RECEPTOR 8 (EPHA8)
Authors
:
J. R. Walker, L. Yermekbayeva, J. Kania, C. Bountra, J. Weigelt, C. H. Ar A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Structural Genomics C (Sgc)
Date
:
27 Nov 09 (Deposition) - 15 Dec 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Atp-Binding, Kinase, Nucleotide-Binding, Receptor, Transferase, Phosphorylation, Transmembrane, Tyrosine-Protein Kinase, Structural Genomics Consortium, Sgc, Glycoprotein, Membrane, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. R. Walker, L. Yermekbayeva, J. Kania, C. Bountra, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
To Be Published
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: GLYCEROL (GOLa)
3a: O-PHOSPHOTYROSINE (PTRa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:11 , HOH A:104 , HOH A:298 , HIS A:693 , ARG A:742 , ARG A:749
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
GLU A:648 , CYS A:650 , ILE A:666 , ALA A:668 , MET A:710
BINDING SITE FOR RESIDUE BME A 401
3
AC3
SOFTWARE
HOH A:58 , TYR A:651 , TYR A:715 , MET A:716 , GLU A:717 , GLY A:719
BINDING SITE FOR RESIDUE GOL A 403
4
AC4
SOFTWARE
HOH A:215 , ARG A:884 , SER A:886 , ARG B:884
BINDING SITE FOR RESIDUE SO4 A 910
5
AC5
SOFTWARE
GLU B:648 , CYS B:650
BINDING SITE FOR RESIDUE BME B 402
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042158 (P860L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042158
P
860
L
EPHA8_HUMAN
Unclassified
---
A/B
P
860
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:641-667,B:641-667)
2: PROTEIN_KINASE_TYR (A:756-768,B:756-768)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EPHA8_HUMAN
641-667
2
A:641-667
B:641-667
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EPHA8_HUMAN
756-768
2
A:756-768
B:756-768
[
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Exons
(6, 12)
Info
All Exons
Exon 1.10 (A:627-644 | B:627-644)
Exon 1.11 (A:644-706 | B:644-706)
Exon 1.12 (A:706-726 | B:706-726)
Exon 1.13 (A:727-796 (gaps) | B:727-795)
Exon 1.14 (A:800-846 | B:797-846)
Exon 1.15 (A:847-900 | B:847-899)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
5: Boundary 1.13/1.14
6: Boundary 1.14/1.15
7: Boundary 1.15/1.16
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000166244
1
ENSE00001156951
chr1:
22890057-22890222
166
EPHA8_HUMAN
1-32
32
0
-
-
1.2
ENST00000166244
2
ENSE00000388454
chr1:
22895782-22895846
65
EPHA8_HUMAN
32-53
22
0
-
-
1.3
ENST00000166244
3
ENSE00001131811
chr1:
22902710-22903373
664
EPHA8_HUMAN
54-275
222
0
-
-
1.4
ENST00000166244
4
ENSE00000759543
chr1:
22912973-22913128
156
EPHA8_HUMAN
275-327
53
0
-
-
1.5a
ENST00000166244
5a
ENSE00001131796
chr1:
22915364-22915699
336
EPHA8_HUMAN
327-439
113
0
-
-
1.6
ENST00000166244
6
ENSE00000759532
chr1:
22919819-22919943
125
EPHA8_HUMAN
439-480
42
0
-
-
1.7
ENST00000166244
7
ENSE00000759516
chr1:
22920017-22920179
163
EPHA8_HUMAN
481-535
55
0
-
-
1.8
ENST00000166244
8
ENSE00000759515
chr1:
22921723-22921816
94
EPHA8_HUMAN
535-566
32
0
-
-
1.9
ENST00000166244
9
ENSE00000759471
chr1:
22922599-22922666
68
EPHA8_HUMAN
566-589
24
0
-
-
1.10
ENST00000166244
10
ENSE00000560716
chr1:
22923805-22923969
165
EPHA8_HUMAN
589-644
56
2
A:627-644
B:627-644
18
18
1.11
ENST00000166244
11
ENSE00000388463
chr1:
22924169-22924354
186
EPHA8_HUMAN
644-706
63
2
A:644-706
B:644-706
63
63
1.12
ENST00000166244
12
ENSE00000560718
chr1:
22924644-22924705
62
EPHA8_HUMAN
706-726
21
2
A:706-726
B:706-726
21
21
1.13
ENST00000166244
13
ENSE00000388465
chr1:
22925331-22925540
210
EPHA8_HUMAN
727-796
70
2
A:727-796 (gaps)
B:727-795
70
69
1.14
ENST00000166244
14
ENSE00001753689
chr1:
22927154-22927303
150
EPHA8_HUMAN
797-846
50
2
A:800-846
B:797-846
47
50
1.15
ENST00000166244
15
ENSE00000859688
chr1:
22927391-22927581
191
EPHA8_HUMAN
847-910
64
2
A:847-900
B:847-899
54
53
1.16
ENST00000166244
16
ENSE00000388468
chr1:
22927793-22927966
174
EPHA8_HUMAN
910-968
59
0
-
-
1.17
ENST00000166244
17
ENSE00001156943
chr1:
22928120-22930087
1968
EPHA8_HUMAN
968-1005
38
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3kula_ (A:)
1b: SCOP_d3kulb_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3kula_
A:
1b
d3kulb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3kulA01 (A:627-715)
1b: CATH_3kulB01 (B:627-715)
2a: CATH_3kulB02 (B:716-899)
2b: CATH_3kulA02 (A:716-900)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3kulA01
A:627-715
1b
3kulB01
B:627-715
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3kulB02
B:716-899
2b
3kulA02
A:716-900
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3kulB01 (B:635-892)
1b: PFAM_Pkinase_Tyr_3kulB02 (B:635-892)
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Families
(
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(
)
Organisms
(
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(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3kulB01
B:635-892
1b
Pkinase_Tyr-3kulB02
B:635-892
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