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3KTR
Asym. Unit
Info
Asym.Unit (22 KB)
Biol.Unit 1 (17 KB)
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(1)
Title
:
STRUCTURAL BASIS OF ATAXIN-2 RECOGNITION BY POLY(A)-BINDING PROTEIN
Authors
:
G. Kozlov, K. Gehring
Date
:
25 Nov 09 (Deposition) - 23 Feb 10 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Complex, Acetylation, Alternative Splicing, Cytoplasm, Methylation, Mrna Processing, Mrna Splicing, Nucleus, Phosphoprotein, Rna-Binding, Spliceosome, Neurodegeneration, Parkinsonism, Polymorphism, Spinocerebellar Ataxia, Triplet Repeat Expansion, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Kozlov, N. Safaee, A. Rosenauer, K. Gehring
Structural Basis Of Binding Of P-Body-Associated Proteins Gw182 And Ataxin-2 By The Mlle Domain Of Poly(A)-Binding Protein.
J. Biol. Chem. V. 285 13599 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
1
Ligand/Ion
CADMIUM ION
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:598 , HIS A:617 , GLU A:621 , HOH B:30 , ASN B:917
BINDING SITE FOR RESIDUE CD A 1
2
AC2
SOFTWARE
GLU A:557 , HIS A:617 , LYS A:620 , SER B:925 , PHE B:926 , SER B:927
BINDING SITE FOR RESIDUE SO4 A 627
3
AC3
SOFTWARE
HIS A:574 , PRO A:575 , THR A:576 , LEU A:577 , GLU A:601 , ARG A:604 , LYS B:919
BINDING SITE FOR RESIDUE SO4 A 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(3, 3)
Info
All Exons
Exon 1.11 (A:543-563)
Exon 1.12a (A:563-606)
Exon 1.13a (A:607-623)
View:
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All Exon Boundaries
1: Boundary 1.10b/1.11
2: Boundary 1.11/1.12a
3: Boundary 1.12a/1.13a
4: Boundary 1.13a/1.14e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000318607
1e
ENSE00002107718
chr8:
101734940-101733619
1322
PABP1_HUMAN
1-65
65
0
-
-
1.2e
ENST00000318607
2e
ENSE00002179154
chr8:
101730508-101730315
194
PABP1_HUMAN
65-129
65
0
-
-
1.2i
ENST00000318607
2i
ENSE00001088711
chr8:
101730116-101730001
116
PABP1_HUMAN
130-168
39
0
-
-
1.3b
ENST00000318607
3b
ENSE00001676241
chr8:
101727829-101727690
140
PABP1_HUMAN
168-215
48
0
-
-
1.4c
ENST00000318607
4c
ENSE00001088702
chr8:
101725409-101725315
95
PABP1_HUMAN
215-246
32
0
-
-
1.5a
ENST00000318607
5a
ENSE00001088717
chr8:
101725017-101724880
138
PABP1_HUMAN
247-292
46
0
-
-
1.6a
ENST00000318607
6a
ENSE00001088710
chr8:
101724685-101724590
96
PABP1_HUMAN
293-324
32
0
-
-
1.7b
ENST00000318607
7b
ENSE00002184139
chr8:
101721959-101721687
273
PABP1_HUMAN
325-415
91
0
-
-
1.8c
ENST00000318607
8c
ENSE00001088708
chr8:
101721451-101721361
91
PABP1_HUMAN
416-446
31
0
-
-
1.9b
ENST00000318607
9b
ENSE00001088705
chr8:
101719225-101719115
111
PABP1_HUMAN
446-483
38
0
-
-
1.10b
ENST00000318607
10b
ENSE00002199412
chr8:
101719033-101718879
155
PABP1_HUMAN
483-534
52
0
-
-
1.11
ENST00000318607
11
ENSE00001088703
chr8:
101717901-101717817
85
PABP1_HUMAN
535-563
29
1
A:543-563
21
1.12a
ENST00000318607
12a
ENSE00001088713
chr8:
101717284-101717154
131
PABP1_HUMAN
563-606
44
1
A:563-606
44
1.13a
ENST00000318607
13a
ENSE00001088716
chr8:
101716618-101716525
94
PABP1_HUMAN
607-636
30
1
A:607-623
17
1.14e
ENST00000318607
14e
ENSE00001378950
chr8:
101715587-101715144
444
PABP1_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_PABP_3ktrA01 (A:544-614)
2a: PFAM_PAM2_3ktrB01 (B:913-926)
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Clans
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Clan
:
no clan defined [family: PABP]
(14)
Family
:
PABP
(14)
Homo sapiens (Human)
(13)
1a
PABP-3ktrA01
A:544-614
Clan
:
no clan defined [family: PAM2]
(7)
Family
:
PAM2
(7)
Homo sapiens (Human)
(7)
2a
PAM2-3ktrB01
B:913-926
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Asymmetric Unit 1
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