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3KSQ
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (127 KB)
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(1)
Title
:
DISCOVERY OF C-IMIDAZOLE AZAHEPTAPYRIDINE FPT INHIBITORS
Authors
:
H. Y. Zhu, A. B. Cooper, G. Njoroge, P. Kirschmeier, C. Strickland, A. Hruza, V. M. Girijavallabhan
Date
:
23 Nov 09 (Deposition) - 26 Jan 10 (Release) - 02 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Prenyltransferase, Metal-Binding, Phosphoprotein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Y. Zhu, A. B. Cooper, J. Desai, G. Njoroge, P. Kirschmeier, W. R. Bishop, C. Strickland, A. Hruza, R. J. Doll, V. M. Girijavallabhan
Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors.
Bioorg. Med. Chem. Lett. V. 20 1134 2010
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: FARNESYL DIPHOSPHATE (FPPa)
2a: MAGNESIUM ION (MGa)
3a: TERT-BUTYL 4-{(11S)-8-CHLORO-6-[(R... (Z96a)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FPP
1
Ligand/Ion
FARNESYL DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
Z96
1
Ligand/Ion
TERT-BUTYL 4-{(11S)-8-CHLORO-6-[(R)-HYDROXY(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-11H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL}PIPERAZINE-1-CARBOXYLATE
4
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:381 , HOH A:427 , HIS B:194 , GLU B:198
BINDING SITE FOR RESIDUE MG B 1001
2
AC2
SOFTWARE
ASP B:297 , CYS B:299 , HIS B:362 , Z96 B:439
BINDING SITE FOR RESIDUE ZN B 2001
3
AC3
SOFTWARE
LYS A:164 , TYR A:166 , TYR A:200 , TRP B:102 , TYR B:205 , HIS B:248 , GLY B:250 , TYR B:251 , CYS B:254 , GLY B:290 , ARG B:291 , LYS B:294 , TYR B:300 , TRP B:303 , Z96 B:439 , HOH B:445 , HOH B:505 , HOH B:531
BINDING SITE FOR RESIDUE FPP B 438
4
AC4
SOFTWARE
LYS A:164 , ALA B:92 , CYS B:95 , LEU B:96 , TRP B:106 , ASP B:297 , CYS B:299 , TYR B:300 , ASP B:359 , TYR B:361 , HIS B:362 , FPP B:438 , HOH B:524 , HOH B:530 , HOH B:587 , ZN B:2001
BINDING SITE FOR RESIDUE Z96 B 439
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: PFTA (A:112-146|A:147-181|A:215-249|A:18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFTA
PS51147
Protein prenyltransferases alpha subunit repeat profile.
FNTA_RAT
112-146
147-181
215-249
182-214
255-289
5
A:112-146
A:147-181
A:215-249
A:182-214
A:255-289
[
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Exons
(21, 21)
Info
All Exons
Exon 1.1 (B:21-48)
Exon 1.2 (B:49-70)
Exon 1.3 (B:70-94)
Exon 1.4 (B:95-125)
Exon 1.5 (B:125-174)
Exon 1.6 (B:174-202)
Exon 1.7 (B:202-231)
Exon 1.8 (B:231-274)
Exon 1.9 (B:275-319)
Exon 1.10 (B:319-356)
Exon 1.11 (B:356-394)
Exon 1.12 (B:395-423)
Exon 2.1 (A:54-67)
Exon 2.2 (A:67-96)
Exon 2.3 (A:96-134)
Exon 2.4 (A:134-169)
Exon 2.5 (A:169-211)
Exon 2.6 (A:212-261)
Exon 2.7 (A:261-282)
Exon 2.8 (A:282-339)
Exon 2.9 (A:340-368)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/-
14: Boundary -/2.1
15: Boundary 2.1/2.2
16: Boundary 2.2/2.3
17: Boundary 2.3/2.4
18: Boundary 2.4/2.5
19: Boundary 2.5/2.6
20: Boundary 2.6/2.7
21: Boundary 2.7/2.8
22: Boundary 2.8/2.9
23: Boundary 2.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000010588
1
ENSRNOE00000071243
chr6:
99427967-99428155
189
FNTB_RAT
1-48
48
1
B:21-48
28
1.2
ENSRNOT00000010588
2
ENSRNOE00000071421
chr6:
99447593-99447657
65
FNTB_RAT
49-70
22
1
B:49-70
22
1.3
ENSRNOT00000010588
3
ENSRNOE00000071602
chr6:
99457445-99457517
73
FNTB_RAT
70-94
25
1
B:70-94
25
1.4
ENSRNOT00000010588
4
ENSRNOE00000071771
chr6:
99459109-99459200
92
FNTB_RAT
95-125
31
1
B:95-125
31
1.5
ENSRNOT00000010588
5
ENSRNOE00000071976
chr6:
99471356-99471502
147
FNTB_RAT
125-174
50
1
B:125-174
50
1.6
ENSRNOT00000010588
6
ENSRNOE00000072148
chr6:
99471595-99471678
84
FNTB_RAT
174-202
29
1
B:174-202
29
1.7
ENSRNOT00000010588
7
ENSRNOE00000072321
chr6:
99480586-99480672
87
FNTB_RAT
202-231
30
1
B:202-231
30
1.8
ENSRNOT00000010588
8
ENSRNOE00000072507
chr6:
99489459-99489588
130
FNTB_RAT
231-274
44
1
B:231-274
44
1.9
ENSRNOT00000010588
9
ENSRNOE00000072695
chr6:
99492633-99492765
133
FNTB_RAT
275-319
45
1
B:275-319
45
1.10
ENSRNOT00000010588
10
ENSRNOE00000072879
chr6:
99504658-99504769
112
FNTB_RAT
319-356
38
1
B:319-356
38
1.11
ENSRNOT00000010588
11
ENSRNOE00000073070
chr6:
99505820-99505934
115
FNTB_RAT
356-394
39
1
B:356-394
39
1.12
ENSRNOT00000010588
12
ENSRNOE00000238940
chr6:
99510015-99511373
1359
FNTB_RAT
395-437
43
1
B:395-423
29
2.1
ENSRNOT00000019594
1
ENSRNOE00000138214
chr16:
70440341-70440596
256
Q5RKJ4_RAT
1-67
67
1
A:54-67
14
2.2
ENSRNOT00000019594
2
ENSRNOE00000138501
chr16:
70442686-70442771
86
Q5RKJ4_RAT
67-96
30
1
A:67-96
30
2.3
ENSRNOT00000019594
3
ENSRNOE00000138686
chr16:
70444913-70445027
115
Q5RKJ4_RAT
96-134
39
1
A:96-134
39
2.4
ENSRNOT00000019594
4
ENSRNOE00000138875
chr16:
70447993-70448097
105
Q5RKJ4_RAT
134-169
36
1
A:134-169
36
2.5
ENSRNOT00000019594
5
ENSRNOE00000139070
chr16:
70449789-70449915
127
Q5RKJ4_RAT
169-211
43
1
A:169-211
43
2.6
ENSRNOT00000019594
6
ENSRNOE00000139265
chr16:
70452732-70452880
149
Q5RKJ4_RAT
212-261
50
1
A:212-261
50
2.7
ENSRNOT00000019594
7
ENSRNOE00000139446
chr16:
70456209-70456271
63
Q5RKJ4_RAT
261-282
22
1
A:261-282
22
2.8
ENSRNOT00000019594
8
ENSRNOE00000139614
chr16:
70457447-70457618
172
Q5RKJ4_RAT
282-339
58
1
A:282-339
58
2.9
ENSRNOT00000019594
9
ENSRNOE00000271431
chr16:
70457826-70458433
608
Q5RKJ4_RAT
340-377
38
1
A:340-368
29
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3ksqa_ (A:)
2a: SCOP_d3ksqb_ (B:)
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Classes
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Protein prenylyltransferase
(68)
Family
:
Protein prenylyltransferase
(68)
Protein domain
:
Protein farnesyltransferase alpha-subunit
(64)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(51)
1a
d3ksqa_
A:
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Protein prenyltransferases
(86)
Protein domain
:
Protein farnesyltransferase, beta-subunit
(63)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(50)
2a
d3ksqb_
B:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3ksqA00 (A:54-368)
2a: CATH_3ksqB00 (B:21-423)
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)
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(
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.120, no name defined]
(62)
Rat (Rattus norvegicus)
(9)
1a
3ksqA00
A:54-368
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Rat (Rattus norvegicus)
(21)
2a
3ksqB00
B:21-423
[
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_Prenyltrans_3ksqB01 (B:330-374)
1b: PFAM_Prenyltrans_3ksqB02 (B:330-374)
2a: PFAM_Prenyltrans_2_3ksqB03 (B:127-241)
3a: PFAM_PPTA_3ksqA01 (A:258-288)
3b: PFAM_PPTA_3ksqA02 (A:258-288)
3c: PFAM_PPTA_3ksqA03 (A:258-288)
3d: PFAM_PPTA_3ksqA04 (A:258-288)
3e: PFAM_PPTA_3ksqA05 (A:258-288)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Prenyltrans
(49)
Rattus norvegicus (Rat)
(31)
1a
Prenyltrans-3ksqB01
B:330-374
1b
Prenyltrans-3ksqB02
B:330-374
Family
:
Prenyltrans_2
(47)
Rattus norvegicus (Rat)
(31)
2a
Prenyltrans_2-3ksqB03
B:127-241
Clan
:
no clan defined [family: PPTA]
(36)
Family
:
PPTA
(36)
Rattus norvegicus (Rat)
(31)
3a
PPTA-3ksqA01
A:258-288
3b
PPTA-3ksqA02
A:258-288
3c
PPTA-3ksqA03
A:258-288
3d
PPTA-3ksqA04
A:258-288
3e
PPTA-3ksqA05
A:258-288
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Asym.Unit (132 KB)
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