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3KSE
Asym. Unit
Info
Asym.Unit (179 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (60 KB)
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(1)
Title
:
UNREDUCED CATHEPSIN L IN COMPLEX WITH STEFIN A
Authors
:
M. Renko, D. Turk
Date
:
22 Nov 09 (Deposition) - 01 Dec 10 (Release) - 01 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.71
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Cathepsin, Protease-Inhibitor Complex, Stefin, Cystatin, Papain-Like, Cysteine Protease, Hydrolase, Lysosome, Protease, Thiol Protease, Zymogen, Thiol Protease Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
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Reference
:
M. Renko, D. Turk
Unreduced Cathepsin L In Complex With Stefin A
To Be Published
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: S-METHYL-THIO-CYSTEINE (SCHa)
1b: S-METHYL-THIO-CYSTEINE (SCHb)
1c: S-METHYL-THIO-CYSTEINE (SCHc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SCH
3
Mod. Amino Acid
S-METHYL-THIO-CYSTEINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048851 (T96M, chain D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048851
T
96
M
CYTA_HUMAN
Polymorphism
34173813
D/E/F
T
96
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: CYSTATIN (D:45-58,E:45-58,F:45-58)
2: THIOL_PROTEASE_CYS (A:19-30,B:19-30,C:19-30)
3: THIOL_PROTEASE_HIS (A:161-171,B:161-171,C:161-171)
4: THIOL_PROTEASE_ASN (A:182-201,B:182-201,C:182-201)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYSTATIN
PS00287
Cysteine proteases inhibitors signature.
CYTA_HUMAN
45-58
3
D:45-58
E:45-58
F:45-58
2
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATL1_HUMAN
132-143
3
A:19-30
B:19-30
C:19-30
3
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATL1_HUMAN
274-284
3
A:161-171
B:161-171
C:161-171
4
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATL1_HUMAN
295-314
3
A:182-201
B:182-201
C:182-201
[
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Exons
(8, 24)
Info
All Exons
Exon 1.1a (D:1-22 | E:1-22 | F:1-22)
Exon 1.2a (D:23-56 | E:23-56 | F:23-56)
Exon 1.3 (D:57-98 | E:57-98 | F:57-98)
Exon 2.4 (A:1-19 | B:1-19 | C:1-19)
Exon 2.5a (A:20-94 | B:20-94 | C:20-94)
Exon 2.6b (A:95-149 | B:95-149 | C:95-149)
Exon 2.7 (A:149-188 | B:149-188 | C:149-188)
Exon 2.8c (A:188-220 | B:188-220 | C:188-220)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.3
04: Boundary 1.3/-
05: Boundary 2.3a/2.4
06: Boundary 2.4/2.5a
07: Boundary 2.5a/2.6b
08: Boundary 2.6b/2.7
09: Boundary 2.7/2.8c
10: Boundary 2.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264474
1a
ENSE00001154693
chr3:
122044091-122044205
115
CYTA_HUMAN
1-22
22
3
D:1-22
E:1-22
F:1-22
22
22
22
1.2a
ENST00000264474
2a
ENSE00001078746
chr3:
122056394-122056495
102
CYTA_HUMAN
23-56
34
3
D:23-56
E:23-56
F:23-56
34
34
34
1.3
ENST00000264474
3
ENSE00001154683
chr3:
122060286-122060819
534
CYTA_HUMAN
57-98
42
3
D:57-98
E:57-98
F:57-98
42
42
42
2.1a
ENST00000343150
1a
ENSE00001886667
chr9:
90340434-90341313
880
CATL1_HUMAN
-
0
0
-
-
2.2b
ENST00000343150
2b
ENSE00002159545
chr9:
90342509-90342644
136
CATL1_HUMAN
1-42
42
0
-
-
2.3a
ENST00000343150
3a
ENSE00001686191
chr9:
90342942-90343064
123
CATL1_HUMAN
43-83
41
0
-
-
2.4
ENST00000343150
4
ENSE00001692924
chr9:
90343165-90343311
147
CATL1_HUMAN
84-132
49
3
A:1-19
B:1-19
C:1-19
19
19
19
2.5a
ENST00000343150
5a
ENSE00000917752
chr9:
90343500-90343724
225
CATL1_HUMAN
133-207
75
3
A:20-94
B:20-94
C:20-94
75
75
75
2.6b
ENST00000343150
6b
ENSE00000917753
chr9:
90344488-90344650
163
CATL1_HUMAN
208-262
55
3
A:95-149
B:95-149
C:95-149
55
55
55
2.7
ENST00000343150
7
ENSE00001618315
chr9:
90345296-90345413
118
CATL1_HUMAN
262-301
40
3
A:149-188
B:149-188
C:149-188
40
40
40
2.8c
ENST00000343150
8c
ENSE00001931704
chr9:
90345923-90346307
385
CATL1_HUMAN
301-333
33
3
A:188-220
B:188-220
C:188-220
33
33
33
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3ksed_ (D:)
1b: SCOP_d3ksee_ (E:)
1c: SCOP_d3ksef_ (F:)
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Cystatins
(31)
Protein domain
:
Cystatin A (stefin A)
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d3ksed_
D:
1b
d3ksee_
E:
1c
d3ksef_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
Info
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
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Biol.Unit 3 (60 KB)
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