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Getting 'Exon' information from database.
3KRX
Asym. Unit
Info
Asym.Unit (299 KB)
Biol.Unit 1 (293 KB)
(using Jmol or JSmol)
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(1)
Title
:
HUMAN GRK2 IN COMPLEX WITH GBETGAMMA SUBUNITS AND BALANOL (CO-CRYSTAL)
Authors
:
J. J. G. Tesmer, V. M. Tesmer
Date
:
19 Nov 09 (Deposition) - 16 Feb 10 (Release) - 05 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,G
Biol. Unit 1: A,B,G (1x)
Keywords
:
Rgs Homology Domain, Atp-Binding, Phosphoprotein, Serine/Threonine- Protein Kinase, Transferase, Transducer, Wd Repeat, Cell Membrane, Lipoprotein, Membrane, Methylation, Prenylation, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Tesmer, V. M. Tesmer, D. T. Lodowski, H. Steinhagen, J. Huber
Structure Of Human G Protein-Coupled Receptor Kinase 2 In Complex With The Kinase Inhibitor Balanol.
J. Med. Chem. V. 53 1867 2010
[
close entry info
]
Hetero Components
(3, 3)
Info
All Hetero Components
1a: BALANOL (BA1a)
2a: O-METHYLCYSTEINE (CMTa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BA1
1
Ligand/Ion
BALANOL
2
CMT
1
Mod. Amino Acid
O-METHYLCYSTEINE
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:197 , GLY A:198 , ARG A:199 , GLY A:201 , PHE A:202 , GLY A:203 , VAL A:205 , ALA A:218 , LYS A:220 , GLU A:239 , ASP A:272 , LEU A:273 , MET A:274 , ALA A:321 , LEU A:324 , SER A:334 , ASP A:335 , GLY A:337
BINDING SITE FOR RESIDUE BA1 A 690
2
AC2
SOFTWARE
HIS A:348 , GLU A:360 , VAL A:361 , GLN A:363 , VAL A:366 , TYR A:368
BINDING SITE FOR RESIDUE MG A 691
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040378 (I184T, chain A, )
2: VAR_040379 (R578Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040378
I
184
T
ARBK1_HUMAN
Polymorphism
55696045
A
I
184
T
2
UniProt
VAR_040379
R
578
Q
ARBK1_HUMAN
Unclassified
---
A
R
578
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(6, 8)
Info
All PROSITE Patterns/Profiles
1: RGS (A:54-175)
2: WD_REPEATS_1 (B:70-84|B:157-171|B:285-299)
3: PROTEIN_KINASE_ATP (A:197-220)
4: PROTEIN_KINASE_ST (A:313-325)
5: AGC_KINASE_CTER (A:454-521)
6: PH_DOMAIN (A:558-652)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
ARBK1_HUMAN
54-175
1
A:54-175
2
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBB1_BOVIN
70-84
157-171
285-299
3
B:70-84
B:157-171
B:285-299
3
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ARBK1_HUMAN
197-220
1
A:197-220
4
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
ARBK1_HUMAN
313-325
1
A:313-325
5
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
ARBK1_HUMAN
454-521
1
A:454-521
6
PH_DOMAIN
PS50003
PH domain profile.
ARBK1_HUMAN
558-652
1
A:558-652
[
close PROSITE info
]
Exons
(32, 32)
Info
All Exons
Exon 1.3 (G:8-29)
Exon 1.4 (G:30-68)
Exon 2.3 (B:3-19)
Exon 2.4 (B:20-32)
Exon 2.5 (B:33-68)
Exon 2.6 (B:68-89)
Exon 2.7 (B:90-144)
Exon 2.8 (B:144-166)
Exon 2.9 (B:166-233)
Exon 2.10 (B:234-306)
Exon 2.11 (B:306-340)
Exon 3.1a (A:30-38)
Exon 3.3b (A:38-64)
Exon 3.4 (A:64-88)
Exon 3.5a (A:89-122 (gaps))
Exon 3.6 (A:123-147)
Exon 3.7 (A:148-168)
Exon 3.8b (A:168-185)
Exon 3.8d (A:186-216)
Exon 3.9a (A:216-249)
Exon 3.10a (A:250-276)
Exon 3.11a (A:276-319)
Exon 3.11f (A:320-351)
Exon 3.11i (A:351-387)
Exon 3.12a (A:387-409)
Exon 3.13a (A:410-443)
Exon 3.13e (A:443-465)
Exon 3.13g (A:466-497 (gaps))
Exon 3.13l (A:498-552)
Exon 3.14a (A:552-597 (gaps))
Exon 3.14d (A:598-635)
Exon 3.15c (A:636-671)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/-
04: Boundary 2.1/2.3
05: Boundary 2.3/2.4
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7
09: Boundary 2.7/2.8
10: Boundary 2.8/2.9
11: Boundary 2.9/2.10
12: Boundary 2.10/2.11
13: Boundary 2.11/2.12b
14: Boundary -/3.1a
15: Boundary 3.1a/3.3b
16: Boundary 3.3b/3.4
17: Boundary 3.4/3.5a
18: Boundary 3.5a/3.6
19: Boundary 3.6/3.7
20: Boundary 3.7/3.8b
21: Boundary 3.8b/3.8d
22: Boundary 3.8d/3.9a
23: Boundary 3.9a/3.10a
24: Boundary 3.10a/3.11a
25: Boundary 3.11a/3.11f
26: Boundary 3.11f/3.11i
27: Boundary 3.11i/3.12a
28: Boundary 3.12a/3.13a
29: Boundary 3.13a/3.13e
30: Boundary 3.13e/3.13g
31: Boundary 3.13g/3.13l
32: Boundary 3.13l/3.14a
33: Boundary 3.14a/3.14d
34: Boundary 3.14d/3.15c
35: Boundary 3.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000003959
1
ENSBTAE00000426893
chr10:
44963483-44963676
194
GBG2_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000003959
2
ENSBTAE00000334135
chr10:
44982173-44982213
41
GBG2_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000003959
3
ENSBTAE00000031865
chr10:
45110571-45110684
114
GBG2_BOVIN
1-29
29
1
G:8-29
22
1.4
ENSBTAT00000003959
4
ENSBTAE00000031866
chr10:
45131763-45132218
456
GBG2_BOVIN
30-71
42
1
G:30-68
39
2.1
ENSBTAT00000045065
1
ENSBTAE00000334067
chr16:
48127959-48128171
213
GBB1_BOVIN
-
0
0
-
-
2.3
ENSBTAT00000045065
3
ENSBTAE00000002006
chr16:
48183972-48184074
103
GBB1_BOVIN
1-19
19
1
B:3-19
17
2.4
ENSBTAT00000045065
4
ENSBTAE00000002007
chr16:
48187973-48188011
39
GBB1_BOVIN
20-32
13
1
B:20-32
13
2.5
ENSBTAT00000045065
5
ENSBTAE00000376692
chr16:
48189546-48189652
107
GBB1_BOVIN
33-68
36
1
B:33-68
36
2.6
ENSBTAT00000045065
6
ENSBTAE00000386769
chr16:
48193508-48193571
64
GBB1_BOVIN
68-89
22
1
B:68-89
22
2.7
ENSBTAT00000045065
7
ENSBTAE00000002010
chr16:
48194640-48194802
163
GBB1_BOVIN
90-144
55
1
B:90-144
55
2.8
ENSBTAT00000045065
8
ENSBTAE00000394803
chr16:
48200709-48200775
67
GBB1_BOVIN
144-166
23
1
B:144-166
23
2.9
ENSBTAT00000045065
9
ENSBTAE00000002012
chr16:
48202132-48202333
202
GBB1_BOVIN
166-233
68
1
B:166-233
68
2.10
ENSBTAT00000045065
10
ENSBTAE00000388531
chr16:
48203047-48203263
217
GBB1_BOVIN
234-306
73
1
B:234-306
73
2.11
ENSBTAT00000045065
11
ENSBTAE00000002014
chr16:
48203934-48204049
116
GBB1_BOVIN
306-340
35
1
B:306-340
35
2.12b
ENSBTAT00000045065
12b
ENSBTAE00000334058
chr16:
48204269-48205916
1648
GBB1_BOVIN
-
0
0
-
-
3.1a
ENST00000308595
1a
ENSE00001356365
chr11:
67033881-67034283
403
ARBK1_HUMAN
1-38
38
1
A:30-38
9
3.3b
ENST00000308595
3b
ENSE00001327605
chr11:
67044743-67044819
77
ARBK1_HUMAN
38-64
27
1
A:38-64
27
3.4
ENST00000308595
4
ENSE00001186794
chr11:
67046671-67046744
74
ARBK1_HUMAN
64-88
25
1
A:64-88
25
3.5a
ENST00000308595
5a
ENSE00001186790
chr11:
67046889-67046990
102
ARBK1_HUMAN
89-122
34
1
A:89-122 (gaps)
34
3.6
ENST00000308595
6
ENSE00001186784
chr11:
67047097-67047171
75
ARBK1_HUMAN
123-147
25
1
A:123-147
25
3.7
ENST00000308595
7
ENSE00001186778
chr11:
67047310-67047371
62
ARBK1_HUMAN
148-168
21
1
A:148-168
21
3.8b
ENST00000308595
8b
ENSE00001186774
chr11:
67048203-67048254
52
ARBK1_HUMAN
168-185
18
1
A:168-185
18
3.8d
ENST00000308595
8d
ENSE00001186767
chr11:
67048564-67048655
92
ARBK1_HUMAN
186-216
31
1
A:186-216
31
3.9a
ENST00000308595
9a
ENSE00001186763
chr11:
67048930-67049029
100
ARBK1_HUMAN
216-249
34
1
A:216-249
34
3.10a
ENST00000308595
10a
ENSE00001618837
chr11:
67049121-67049199
79
ARBK1_HUMAN
250-276
27
1
A:250-276
27
3.11a
ENST00000308595
11a
ENSE00001186756
chr11:
67049293-67049423
131
ARBK1_HUMAN
276-319
44
1
A:276-319
44
3.11f
ENST00000308595
11f
ENSE00001186750
chr11:
67049742-67049836
95
ARBK1_HUMAN
320-351
32
1
A:320-351
32
3.11i
ENST00000308595
11i
ENSE00001186745
chr11:
67049906-67050013
108
ARBK1_HUMAN
351-387
37
1
A:351-387
37
3.12a
ENST00000308595
12a
ENSE00001186741
chr11:
67050223-67050289
67
ARBK1_HUMAN
387-409
23
1
A:387-409
23
3.13a
ENST00000308595
13a
ENSE00001186735
chr11:
67050599-67050699
101
ARBK1_HUMAN
410-443
34
1
A:410-443
34
3.13e
ENST00000308595
13e
ENSE00001186730
chr11:
67051178-67051244
67
ARBK1_HUMAN
443-465
23
1
A:443-465
23
3.13g
ENST00000308595
13g
ENSE00001186725
chr11:
67051325-67051420
96
ARBK1_HUMAN
466-497
32
1
A:466-497 (gaps)
32
3.13l
ENST00000308595
13l
ENSE00001186721
chr11:
67051682-67051844
163
ARBK1_HUMAN
498-552
55
1
A:498-552
55
3.14a
ENST00000308595
14a
ENSE00001186716
chr11:
67052318-67052454
137
ARBK1_HUMAN
552-597
46
1
A:552-597 (gaps)
46
3.14d
ENST00000308595
14d
ENSE00001186711
chr11:
67052546-67052659
114
ARBK1_HUMAN
598-635
38
1
A:598-635
38
3.15c
ENST00000308595
15c
ENSE00002193440
chr11:
67052757-67054027
1271
ARBK1_HUMAN
636-689
54
1
A:636-671
36
[
close EXON info
]
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d3krxg_ (G:)
2a: SCOP_d3krxa1 (A:30-185)
3a: SCOP_d3krxb_ (B:)
4a: SCOP_d3krxa3 (A:550-671)
5a: SCOP_d3krxa2 (A:186-549)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Family
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Protein domain
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d3krxg_
G:
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
automated matches
(25)
Protein domain
:
automated matches
(25)
Human (Homo sapiens) [TaxId: 9606]
(24)
2a
d3krxa1
A:30-185
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
beta1-subunit of the signal-transducing G protein heterotrimer
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
3a
d3krxb_
B:
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(30)
4a
d3krxa3
A:550-671
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
5a
d3krxa2
A:186-549
[
close SCOP info
]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_3krxA03 (A:186-275,A:495-512)
2a: CATH_3krxA02 (A:79-158)
3a: CATH_3krxA04 (A:276-494)
4a: CATH_3krxA05 (A:554-660)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3krxA03
A:186-275,A:495-512
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Regulator of G-protein Signalling 4; domain 2
(19)
Homologous Superfamily
:
Regulator of G-protein Signalling 4, domain 2
(19)
Human (Homo sapiens)
(11)
2a
3krxA02
A:79-158
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
3krxA04
A:276-494
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
4a
3krxA05
A:554-660
[
close CATH info
]
Pfam Domains
(5, 11)
Info
all PFAM domains
1a: PFAM_WD40_3krxB01 (B:304-340)
1b: PFAM_WD40_3krxB02 (B:304-340)
1c: PFAM_WD40_3krxB03 (B:304-340)
1d: PFAM_WD40_3krxB04 (B:304-340)
1e: PFAM_WD40_3krxB05 (B:304-340)
1f: PFAM_WD40_3krxB06 (B:304-340)
1g: PFAM_WD40_3krxB07 (B:304-340)
2a: PFAM_PH_3krxA01 (A:559-652)
3a: PFAM_Pkinase_3krxA02 (A:191-453)
4a: PFAM_RGS_3krxA03 (A:54-174)
5a: PFAM_G_gamma_3krxG01 (G:8-68)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Bos taurus (Bovine)
(19)
1a
WD40-3krxB01
B:304-340
1b
WD40-3krxB02
B:304-340
1c
WD40-3krxB03
B:304-340
1d
WD40-3krxB04
B:304-340
1e
WD40-3krxB05
B:304-340
1f
WD40-3krxB06
B:304-340
1g
WD40-3krxB07
B:304-340
Clan
:
PH
(111)
Family
:
PH
(71)
Homo sapiens (Human)
(42)
2a
PH-3krxA01
A:559-652
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
3a
Pkinase-3krxA02
A:191-453
Clan
:
RGS
(17)
Family
:
RGS
(16)
Homo sapiens (Human)
(9)
4a
RGS-3krxA03
A:54-174
Clan
:
no clan defined [family: G-gamma]
(10)
Family
:
G-gamma
(10)
Bos taurus (Bovine)
(9)
5a
G-gamma-3krxG01
G:8-68
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain G
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (299 KB)
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Biol.Unit 1 (293 KB)
Header - Biol.Unit 1
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