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3KRD
Asym. Unit
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Asym.Unit (993 KB)
Biol.Unit 1 (981 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PROTEASOME IN COMPLEX WITH FELLUTAMIDE B
Authors
:
D. Li, H. Li
Date
:
18 Nov 09 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2 (1x)
Keywords
:
Binding Sites, Mycobacterium Tuberculosis, Protein Subunits, Substrate Specificity, Hydrolase, Proteasome, Fellutamide B, Inhibition, Protease, Threonine Protease, Virulence, Autocatalytic Cleavage, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Lin, D. Li, T. Chidawanyika, C. Nathan, H. Li
Fellutamide B Is A Potent Inhibitor Of The Mycobacterium Tuberculosis Proteasome.
Arch. Biochem. Biophys. V. 501 214 2010
[
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBa)
1b: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBb)
1c: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBc)
1d: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBd)
1e: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBe)
1f: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBf)
1g: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBg)
1h: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBh)
1i: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBi)
1j: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBj)
1k: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBk)
1l: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBl)
1m: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBm)
1n: N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-... (FEBn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FEB
14
Ligand/Ion
N~2~-[(3R)-3-HYDROXYDODECANOYL]-L-ASPARAGINYL-N~1~-[(1S)-1-(HYDROXYMETHYL)-3-METHYLBUTYL]-L-GLUTAMAMIDE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR C:301 , SER C:320 , THR C:321 , GLN C:322 , SER C:327 , VAL C:331 , GLY C:347 , THR C:348 , ALA C:349 , HOH C:812 , HOH C:849 , HOH C:1894 , HOH C:2350 , HOH C:3006 , HOH C:3011 , HOH H:26 , ASP H:424
BINDING SITE FOR RESIDUE FEB C 300
02
AC2
SOFTWARE
HOH E:2 , HOH E:94 , THR E:301 , SER E:320 , THR E:321 , GLN E:322 , SER E:327 , VAL E:331 , GLY E:347 , THR E:348 , ALA E:349 , HOH E:1252 , HOH E:1935 , ASP R:424 , ALA R:426 , HOH R:850
BINDING SITE FOR RESIDUE FEB E 300
03
AC3
SOFTWARE
HOH G:68 , THR G:301 , SER G:320 , THR G:321 , GLN G:322 , SER G:327 , VAL G:331 , GLY G:347 , THR G:348 , ALA G:349 , HOH G:610 , HOH G:715 , ASP N:424
BINDING SITE FOR RESIDUE FEB G 300
04
AC4
SOFTWARE
HOH H:1 , THR H:301 , SER H:320 , THR H:321 , GLN H:322 , SER H:327 , GLY H:347 , THR H:348 , ALA H:349 , HOH H:545 , HOH H:1098 , HOH H:2412 , HOH H:3024 , HOH P:13 , ASP P:424
BINDING SITE FOR RESIDUE FEB H 300
05
AC5
SOFTWARE
ASP C:424 , ALA C:425 , HOH J:15 , HOH J:39 , THR J:301 , SER J:320 , THR J:321 , GLN J:322 , SER J:327 , VAL J:331 , GLY J:347 , THR J:348 , ALA J:349 , HOH J:678 , HOH J:1060 , HOH J:3033
BINDING SITE FOR RESIDUE FEB J 300
06
AC6
SOFTWARE
ASP E:424 , HOH L:3 , HOH L:7 , THR L:301 , SER L:320 , THR L:321 , GLN L:322 , SER L:327 , VAL L:331 , GLY L:347 , THR L:348 , ALA L:349 , HOH L:559 , HOH L:1266 , HOH L:2550
BINDING SITE FOR RESIDUE FEB L 300
07
AC7
SOFTWARE
HOH L:36 , ASP L:424 , ALA L:426 , HOH N:151 , THR N:301 , SER N:320 , THR N:321 , GLN N:322 , SER N:327 , VAL N:331 , GLY N:347 , THR N:348 , ALA N:349 , HOH N:689 , HOH N:1198 , HOH N:3052
BINDING SITE FOR RESIDUE FEB N 300
08
AC8
SOFTWARE
HOH P:107 , HOH P:114 , HOH P:184 , THR P:301 , SER P:320 , THR P:321 , GLN P:322 , SER P:327 , GLY P:347 , THR P:348 , ALA P:349 , HOH P:2152 , ASP V:424 , ALA V:426
BINDING SITE FOR RESIDUE FEB P 300
09
AC9
SOFTWARE
HOH R:5 , THR R:301 , SER R:320 , THR R:321 , GLN R:322 , SER R:327 , VAL R:331 , GLY R:347 , THR R:348 , ALA R:349 , HOH R:547 , HOH R:961 , HOH R:2894 , ASP Z:424
BINDING SITE FOR RESIDUE FEB R 300
10
BC1
SOFTWARE
HOH J:25 , ASP J:424 , THR T:301 , SER T:320 , THR T:321 , GLN T:322 , SER T:327 , VAL T:331 , GLY T:347 , THR T:348 , ALA T:349 , ALA T:352 , HOH T:824 , HOH T:831
BINDING SITE FOR RESIDUE FEB T 300
11
BC2
SOFTWARE
HOH 2:20 , ASP 2:424 , HOH V:252 , THR V:301 , SER V:320 , THR V:321 , GLN V:322 , SER V:327 , GLY V:347 , THR V:348 , ALA V:349 , HOH V:552 , HOH V:554 , HOH V:780
BINDING SITE FOR RESIDUE FEB V 300
12
BC3
SOFTWARE
ASP G:424 , HOH X:11 , HOH X:189 , THR X:301 , SER X:320 , THR X:321 , GLN X:322 , SER X:327 , VAL X:331 , GLY X:347 , THR X:348 , ALA X:349 , HOH X:545 , HOH X:967 , HOH X:1291
BINDING SITE FOR RESIDUE FEB X 300
13
BC4
SOFTWARE
HOH X:14 , ASP X:424 , HOH Z:4 , THR Z:301 , SER Z:320 , THR Z:321 , GLN Z:322 , SER Z:327 , VAL Z:331 , GLY Z:347 , THR Z:348 , ALA Z:349 , HOH Z:558 , HOH Z:2915
BINDING SITE FOR RESIDUE FEB Z 300
14
BC5
SOFTWARE
HOH 2:6 , THR 2:301 , SER 2:320 , THR 2:321 , GLN 2:322 , SER 2:327 , VAL 2:331 , GLY 2:347 , THR 2:348 , ALA 2:349 , HOH 2:553 , HOH 2:554 , HOH 2:557 , HOH 2:2900 , HOH 2:2927 , HOH T:51 , ASP T:424
BINDING SITE FOR RESIDUE FEB 2 300
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_ALPHA_2 (1:16-234,A:16-234,B:16-233,D:16-23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA_MYCTO
16-234
14
1:16-234
A:16-234
B:16-233
D:16-234
F:16-234
I:16-234
K:16-234
M:16-234
O:16-234
Q:16-234
S:16-234
U:16-234
W:16-234
Y:16-234
PSA_MYCTU
16-234
14
1:16-234
A:16-234
B:16-233
D:16-234
F:16-234
I:16-234
K:16-234
M:16-234
O:16-234
Q:16-234
S:16-234
U:16-234
W:16-234
Y:16-234
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 28)
Info
All SCOP Domains
1a: SCOP_d3krd1_ (1:)
1b: SCOP_d3krdo_ (O:)
1c: SCOP_d3krdp_ (P:)
1d: SCOP_d3krdq_ (Q:)
1e: SCOP_d3krdr_ (R:)
1f: SCOP_d3krds_ (S:)
1g: SCOP_d3krdt_ (T:)
1h: SCOP_d3krdu_ (U:)
1i: SCOP_d3krdv_ (V:)
1j: SCOP_d3krdw_ (W:)
1k: SCOP_d3krdx_ (X:)
1l: SCOP_d3krdy_ (Y:)
1m: SCOP_d3krdz_ (Z:)
1n: SCOP_d3krd2_ (2:)
1o: SCOP_d3krda_ (A:)
1p: SCOP_d3krdb_ (B:)
1q: SCOP_d3krdc_ (C:)
1r: SCOP_d3krdd_ (D:)
1s: SCOP_d3krde_ (E:)
1t: SCOP_d3krdf_ (F:)
1u: SCOP_d3krdg_ (G:)
1v: SCOP_d3krdh_ (H:)
1w: SCOP_d3krdi_ (I:)
1x: SCOP_d3krdj_ (J:)
1y: SCOP_d3krdk_ (K:)
1z: SCOP_d3krdl_ (L:)
1aa: SCOP_d3krdm_ (M:)
1ab: SCOP_d3krdn_ (N:)
View:
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Classes
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)
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)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
automated matches
(78)
Mycobacterium tuberculosis [TaxId: 1773]
(9)
1a
d3krd1_
1:
1b
d3krdo_
O:
1c
d3krdp_
P:
1d
d3krdq_
Q:
1e
d3krdr_
R:
1f
d3krds_
S:
1g
d3krdt_
T:
1h
d3krdu_
U:
1i
d3krdv_
V:
1j
d3krdw_
W:
1k
d3krdx_
X:
1l
d3krdy_
Y:
1m
d3krdz_
Z:
1n
d3krd2_
2:
1o
d3krda_
A:
1p
d3krdb_
B:
1q
d3krdc_
C:
1r
d3krdd_
D:
1s
d3krde_
E:
1t
d3krdf_
F:
1u
d3krdg_
G:
1v
d3krdh_
H:
1w
d3krdi_
I:
1x
d3krdj_
J:
1y
d3krdk_
K:
1z
d3krdl_
L:
1aa
d3krdm_
M:
1ab
d3krdn_
N:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 28)
Info
all PFAM domains
1a: PFAM_Proteasome_3krdY01 (Y:24-206)
1b: PFAM_Proteasome_3krdY02 (Y:24-206)
1c: PFAM_Proteasome_3krdY03 (Y:24-206)
1d: PFAM_Proteasome_3krdY04 (Y:24-206)
1e: PFAM_Proteasome_3krdY05 (Y:24-206)
1f: PFAM_Proteasome_3krdY06 (Y:24-206)
1g: PFAM_Proteasome_3krdY07 (Y:24-206)
1h: PFAM_Proteasome_3krdY08 (Y:24-206)
1i: PFAM_Proteasome_3krdY09 (Y:24-206)
1j: PFAM_Proteasome_3krdY10 (Y:24-206)
1k: PFAM_Proteasome_3krdY11 (Y:24-206)
1l: PFAM_Proteasome_3krdY12 (Y:24-206)
1m: PFAM_Proteasome_3krdY13 (Y:24-206)
1n: PFAM_Proteasome_3krdY14 (Y:24-206)
1o: PFAM_Proteasome_3krdZ01 (Z:301-487)
1p: PFAM_Proteasome_3krdZ02 (Z:301-487)
1q: PFAM_Proteasome_3krdZ03 (Z:301-487)
1r: PFAM_Proteasome_3krdZ04 (Z:301-487)
1s: PFAM_Proteasome_3krdZ05 (Z:301-487)
1t: PFAM_Proteasome_3krdZ06 (Z:301-487)
1u: PFAM_Proteasome_3krdZ07 (Z:301-487)
1v: PFAM_Proteasome_3krdZ08 (Z:301-487)
1w: PFAM_Proteasome_3krdZ09 (Z:301-487)
1x: PFAM_Proteasome_3krdZ10 (Z:301-487)
1y: PFAM_Proteasome_3krdZ11 (Z:301-487)
1z: PFAM_Proteasome_3krdZ12 (Z:301-487)
1aa: PFAM_Proteasome_3krdZ13 (Z:301-487)
1ab: PFAM_Proteasome_3krdZ14 (Z:301-487)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Mycobacterium tuberculosis
(4)
1a
Proteasome-3krdY01
Y:24-206
1b
Proteasome-3krdY02
Y:24-206
1c
Proteasome-3krdY03
Y:24-206
1d
Proteasome-3krdY04
Y:24-206
1e
Proteasome-3krdY05
Y:24-206
1f
Proteasome-3krdY06
Y:24-206
1g
Proteasome-3krdY07
Y:24-206
1h
Proteasome-3krdY08
Y:24-206
1i
Proteasome-3krdY09
Y:24-206
1j
Proteasome-3krdY10
Y:24-206
1k
Proteasome-3krdY11
Y:24-206
1l
Proteasome-3krdY12
Y:24-206
1m
Proteasome-3krdY13
Y:24-206
1n
Proteasome-3krdY14
Y:24-206
1o
Proteasome-3krdZ01
Z:301-487
1p
Proteasome-3krdZ02
Z:301-487
1q
Proteasome-3krdZ03
Z:301-487
1r
Proteasome-3krdZ04
Z:301-487
1s
Proteasome-3krdZ05
Z:301-487
1t
Proteasome-3krdZ06
Z:301-487
1u
Proteasome-3krdZ07
Z:301-487
1v
Proteasome-3krdZ08
Z:301-487
1w
Proteasome-3krdZ09
Z:301-487
1x
Proteasome-3krdZ10
Z:301-487
1y
Proteasome-3krdZ11
Z:301-487
1z
Proteasome-3krdZ12
Z:301-487
1aa
Proteasome-3krdZ13
Z:301-487
1ab
Proteasome-3krdZ14
Z:301-487
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