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3KR3
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IGF-II ANTIBODY COMPLEX
Authors
:
T. S. Peat, J. Newman, T. E. Adams
Date
:
17 Nov 09 (Deposition) - 16 Jun 10 (Release) - 07 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : D,H,L
Biol. Unit 1: D,H,L (1x)
Keywords
:
Antibody-Target Complex, Carbohydrate Metabolism, Glucose Metabolism, Glycoprotein, Growth Factor, Hormone, Mitogen, Osteogenesis, Secreted, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. T. Dransfield, E. H. Cohen, Q. Chang, L. G. Sparrow, J. D. Bentley, O. Dolezal, X. Xiao, T. S. Peat, J. Newman, P. A. Pilling, T. Phan, I. Priebe, G. V. Brierley, N. Kastrapeli, K. Kopacz, D. Martik, D. Wassaf, D. Rank, G. Conley, Y. Huang, T. E. Adams, L. Cosgrove
A Human Monoclonal Antibody Against Insulin-Like Growth Factor-Ii Blocks The Growth Of Human Hepatocellular Carcinoma Cell Lines In Vitro And In Vivo.
Mol. Cancer Ther. V. 9 1809 2010
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL D:35 , ARG D:40 , SER H:30 , ASN H:31 , SER H:53
BINDING SITE FOR RESIDUE EDO H 252
2
AC2
SOFTWARE
LEU H:150 , SER H:186 , LEU H:187 , SER H:188 , THR L:179 , HOH L:255
BINDING SITE FOR RESIDUE EDO H 253
3
AC3
SOFTWARE
GLY H:9 , GLY H:10 , MET H:117 , THR H:119 , PRO H:156 , GLU H:157 , PRO H:158 , PRO H:211 , HOH H:256 , HOH H:320
BINDING SITE FOR RESIDUE EDO H 254
4
AC4
SOFTWARE
PRO L:81 , ARG L:109 , ASP L:171 , SER L:172 , HOH L:291 , HOH L:296
BINDING SITE FOR RESIDUE EDO L 216
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: INSULIN (D:46-60)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULIN
PS00262
Insulin family signature.
IGF2_HUMAN
70-84
1
D:46-60
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Exons
(2, 2)
Info
All Exons
Exon 1.8 (D:5-29)
Exon 1.9b (D:29-64)
View:
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All Exon Boundaries
1: Boundary 1.7b/1.8
2: Boundary 1.8/1.9b
3: Boundary 1.9b/1.10i
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7b
ENST00000381395
7b
ENSE00001488507
chr11:
2158520-2158418
103
IGF2_HUMAN
-
0
0
-
-
1.8
ENST00000381395
8
ENSE00002158068
chr11:
2156759-2156597
163
IGF2_HUMAN
1-53
53
1
D:5-29
25
1.9b
ENST00000381395
9b
ENSE00001655181
chr11:
2154895-2154747
149
IGF2_HUMAN
53-102
50
1
D:29-64
36
1.10i
ENST00000381395
10i
ENSE00001488587
chr11:
2154453-2150342
4112
IGF2_HUMAN
103-180
78
0
-
-
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3kr3l1 (L:1-108)
2a: SCOP_d3kr3l2 (L:109-214)
3a: SCOP_d3kr3d_ (D:)
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Superfamilies
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3kr3l1
L:1-108
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3kr3l2
L:109-214
Class
:
Small proteins
(3458)
Fold
:
Insulin-like
(117)
Superfamily
:
Insulin-like
(117)
Family
:
Insulin-like
(117)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d3kr3d_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3kr3D00 (D:5-64)
2a: CATH_3kr3L02 (L:109-212)
2b: CATH_3kr3H02 (H:123-222)
2c: CATH_3kr3H01 (H:1-122)
View:
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)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Insulin-like, subunit E
(24)
Homologous Superfamily
:
Insulin-like, subunit E
(24)
Human (Homo sapiens)
(20)
1a
3kr3D00
D:5-64
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
3kr3L02
L:109-212
2b
3kr3H02
H:123-222
2c
3kr3H01
H:1-122
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Insulin_3kr3D01 (D:30-60)
1b: PFAM_Insulin_3kr3D02 (D:30-60)
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Clan
:
Insulin
(93)
Family
:
Insulin
(92)
Homo sapiens (Human)
(79)
1a
Insulin-3kr3D01
D:30-60
1b
Insulin-3kr3D02
D:30-60
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Chain L
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (88 KB)
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