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3KQP
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HPNMT IN COMPLEX ADOHCY AND 6-AMINOQUINOLINE
Authors
:
N. Drinkwater, J. L. Martin
Date
:
17 Nov 09 (Deposition) - 29 Sep 10 (Release) - 29 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Methyltransferase, Fragment Screening, Catecholamine Biosynthesis, S- Adenosyl-L-Methionine, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, H. Vu, K. M. Lovell, K. R. Criscione, B. M. Collins, T. E. Prisinzano, S. A. Poulsen, M. J. Mcleish, G. L. Grunewald, J. L. Martin
Fragment-Based Screening By X-Ray Crystallography, Ms And Isothermal Titration Calorimetry To Identify Pnmt (Phenylethanolamine N-Methyltransferase) Inhibitors.
Biochem. J. V. 431 51 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: QUINOLIN-6-AMINE (ES5a)
1b: QUINOLIN-6-AMINE (ES5b)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ES5
2
Ligand/Ion
QUINOLIN-6-AMINE
2
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:27 , TYR A:35 , TYR A:40 , GLY A:79 , SER A:80 , GLY A:81 , THR A:83 , TYR A:85 , GLN A:86 , ASP A:101 , PHE A:102 , LEU A:103 , ASN A:106 , ASP A:158 , VAL A:159 , HIS A:160 , ALA A:181 , PHE A:182 , CYS A:183 , VAL A:187
BINDING SITE FOR RESIDUE SAH A 2001
2
AC2
SOFTWARE
TYR A:35 , ASN A:39 , ARG A:44 , VAL A:53 , LYS A:57 , PHE A:182 , GLU A:219 , TYR A:222 , ASP A:267 , HOH A:2186 , HOH A:2187
BINDING SITE FOR RESIDUE ES5 A 290
3
AC3
SOFTWARE
TYR B:27 , TYR B:35 , TYR B:40 , GLY B:79 , SER B:80 , GLY B:81 , THR B:83 , TYR B:85 , ASP B:101 , PHE B:102 , LEU B:103 , ASN B:106 , ASP B:158 , VAL B:159 , HIS B:160 , ALA B:181 , PHE B:182 , CYS B:183 , VAL B:187 , TYR B:222 , HOH B:2015 , HOH B:2124
BINDING SITE FOR RESIDUE SAH B 2002
4
AC4
SOFTWARE
TYR B:35 , ASN B:39 , ARG B:44 , LYS B:57 , PHE B:182 , GLU B:219 , TYR B:222 , MET B:258 , ASP B:267 , HOH B:2102
BINDING SITE FOR RESIDUE ES5 B 290
[
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SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036829 (T98A, chain A/B, )
2: VAR_036830 (R112C, chain A/B, )
3: VAR_036831 (A175T, chain A/B, )
4: VAR_037611 (S188C, chain A/B, )
5: VAR_037612 (L211H, chain A/B, )
6: VAR_037613 (L217Q, chain A/B, )
7: VAR_037614 (R254H, chain A/B, )
8: VAR_024547 (W276R, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036829
T
98
A
PNMT_HUMAN
Polymorphism
36060376
A/B
T
98
A
2
UniProt
VAR_036830
R
112
C
PNMT_HUMAN
Polymorphism
34530498
A/B
R
112
C
3
UniProt
VAR_036831
A
175
T
PNMT_HUMAN
Polymorphism
34341496
A/B
A
175
T
4
UniProt
VAR_037611
S
188
C
PNMT_HUMAN
Polymorphism
5639
A/B
S
188
C
5
UniProt
VAR_037612
L
211
H
PNMT_HUMAN
Polymorphism
5640
A/B
L
211
H
6
UniProt
VAR_037613
L
217
Q
PNMT_HUMAN
Polymorphism
5641
A/B
L
217
Q
7
UniProt
VAR_037614
R
254
H
PNMT_HUMAN
Polymorphism
5642
A/B
R
254
H
8
UniProt
VAR_024547
W
276
R
PNMT_HUMAN
Polymorphism
5643
A/B
W
276
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: SAM_MT_NNMT_PNMT_TEMT (B:23-281)
2: NNMT_PNMT_TEMT (A:75-91,B:75-91)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_MT_NNMT_PNMT_TEMT
PS51681
SAM-dependent methyltransferase NNMT/PNMT/TEMT-type profile.
PNMT_HUMAN
23-282
1
B:23-281
2
NNMT_PNMT_TEMT
PS01100
NNMT/PNMT/TEMT family of methyltransferases signature.
PNMT_HUMAN
75-91
2
A:75-91
B:75-91
[
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]
Exons
(3, 6)
Info
All Exons
Exon 1.2 (A:24-68 | B:14-68)
Exon 1.3 (A:68-137 | B:68-137)
Exon 1.4b (A:137-280 | B:137-281)
View:
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All Exon Boundaries
1: Boundary -/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000269582
2
ENSE00000950701
chr17:
37824507-37824930
424
PNMT_HUMAN
1-68
68
2
A:24-68
B:14-68
45
55
1.3
ENST00000269582
3
ENSE00001682624
chr17:
37825882-37826089
208
PNMT_HUMAN
68-137
70
2
A:68-137
B:68-137
70
70
1.4b
ENST00000269582
4b
ENSE00000950703
chr17:
37826204-37826728
525
PNMT_HUMAN
137-282
146
2
A:137-280
B:137-281
144
145
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3kqpa_ (A:)
1b: SCOP_d3kqpb_ (B:)
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)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Arylamine N-methyltransferase
(40)
Protein domain
:
automated matches
(31)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3kqpa_
A:
1b
d3kqpb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NNMT_PNMT_TEMT_3kqpB01 (B:14-279)
1b: PFAM_NNMT_PNMT_TEMT_3kqpB02 (B:14-279)
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(
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Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
NNMT_PNMT_TEMT
(24)
Homo sapiens (Human)
(24)
1a
NNMT_PNMT_TEMT-3kqpB01
B:14-279
1b
NNMT_PNMT_TEMT-3kqpB02
B:14-279
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Asymmetric Unit 1
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