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3KQA
Biol. Unit 1
Info
Asym.Unit (273 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (71 KB)
Biol.Unit 4 (70 KB)
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(1)
Title
:
MURA DEAD-END COMPLEX WITH TERREIC ACID
Authors
:
E. Schonbrunn
Date
:
17 Nov 09 (Deposition) - 28 Apr 10 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Open Enzyme State, Inside-Out Alpha/Beta Barrel, Cell Cycle, Cell Division, Cell Shape, Cell Wall Biogenesis/Degradation, Peptidoglycan Synthesis, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Han, Y. Yang, S. H. Olesen, A. Becker, S. Betzi, E. Schonbrunn
The Fungal Product Terreic Acid Is A Covalent Inhibitor Of The Bacterial Cell Wall Biosynthetic Enzyme Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura) .
Biochemistry V. 49 4276 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: BETA-L-ASPARTIC ACID (IASa)
2b: BETA-L-ASPARTIC ACID (IASb)
2c: BETA-L-ASPARTIC ACID (IASc)
2d: BETA-L-ASPARTIC ACID (IASd)
3a: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9a)
3b: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9b)
3c: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9c)
3d: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9d)
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
IAS
1
Mod. Amino Acid
BETA-L-ASPARTIC ACID
3
TR9
1
Ligand/Ion
(5S)-2,5-DIHYDROXY-3-METHYLCYCLOHEX-2-ENE-1,4-DIONE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:115 , ALA A:116 , LEU A:138 , CA A:420 , CA A:421 , HOH A:450 , HOH A:451 , HOH A:457 , HOH A:464 , HOH A:470 , HOH A:502 , HOH A:514 , GLU B:130 , HOH B:429
BINDING SITE FOR RESIDUE TR9 A 500
2
AC2
SOFTWARE
GLU A:130 , CYS B:115 , ALA B:116 , LYS B:137 , LEU B:138 , CA B:421 , CA B:422 , HOH B:458 , HOH B:466 , HOH B:503 , HOH B:524 , HOH B:531
BINDING SITE FOR RESIDUE TR9 B 500
3
AC5
SOFTWARE
LEU A:138 , HOH A:451 , HOH A:457 , TR9 A:500
BINDING SITE FOR RESIDUE CA A 420
4
AC6
SOFTWARE
ALA A:116 , HOH A:446 , HOH A:464 , HOH A:470 , TR9 A:500 , HOH A:502
BINDING SITE FOR RESIDUE CA A 421
5
AC7
SOFTWARE
ILE A:136 , ILE B:136 , HOH B:465 , HOH B:483 , HOH B:520
BINDING SITE FOR RESIDUE CA B 420
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3kqaa_ (A:)
1b: SCOP_d3kqab_ (B:)
1c: SCOP_d3kqac_ (C:)
1d: SCOP_d3kqad_ (D:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
automated matches
(15)
Enterobacter cloacae [TaxId: 550]
(1)
1a
d3kqaa_
A:
1b
d3kqab_
B:
1c
d3kqac_
C:
1d
d3kqad_
D:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3kqaA01 (A:1-18,A:230-418)
1b: CATH_3kqaB01 (B:1-18,B:230-418)
1c: CATH_3kqaC01 (C:1-18,C:230-418)
1d: CATH_3kqaD01 (D:1-18,D:230-418)
1e: CATH_3kqaA02 (A:21-228)
1f: CATH_3kqaB02 (B:21-228)
1g: CATH_3kqaC02 (C:21-228)
1h: CATH_3kqaD02 (D:21-228)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Enterobacter cloacae. Organism_taxid: 550.
(4)
1a
3kqaA01
A:1-18,A:230-418
1b
3kqaB01
B:1-18,B:230-418
1c
3kqaC01
C:1-18,C:230-418
1d
3kqaD01
D:1-18,D:230-418
1e
3kqaA02
A:21-228
1f
3kqaB02
B:21-228
1g
3kqaC02
C:21-228
1h
3kqaD02
D:21-228
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_3kqaD01 (D:6-406)
1b: PFAM_EPSP_synthase_3kqaD02 (D:6-406)
1c: PFAM_EPSP_synthase_3kqaD03 (D:6-406)
1d: PFAM_EPSP_synthase_3kqaD04 (D:6-406)
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Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56)
(6)
1a
EPSP_synthase-3kqaD01
D:6-406
1b
EPSP_synthase-3kqaD02
D:6-406
1c
EPSP_synthase-3kqaD03
D:6-406
1d
EPSP_synthase-3kqaD04
D:6-406
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (273 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Biol.Unit 3 (71 KB)
Header - Biol.Unit 3
Biol.Unit 4 (70 KB)
Header - Biol.Unit 4
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