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3KQA
Asym. Unit
Info
Asym.Unit (273 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (71 KB)
Biol.Unit 4 (70 KB)
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(1)
Title
:
MURA DEAD-END COMPLEX WITH TERREIC ACID
Authors
:
E. Schonbrunn
Date
:
17 Nov 09 (Deposition) - 28 Apr 10 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Open Enzyme State, Inside-Out Alpha/Beta Barrel, Cell Cycle, Cell Division, Cell Shape, Cell Wall Biogenesis/Degradation, Peptidoglycan Synthesis, Transferase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
H. Han, Y. Yang, S. H. Olesen, A. Becker, S. Betzi, E. Schonbrunn
The Fungal Product Terreic Acid Is A Covalent Inhibitor Of The Bacterial Cell Wall Biosynthetic Enzyme Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura) .
Biochemistry V. 49 4276 2010
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: BETA-L-ASPARTIC ACID (IASa)
2b: BETA-L-ASPARTIC ACID (IASb)
2c: BETA-L-ASPARTIC ACID (IASc)
2d: BETA-L-ASPARTIC ACID (IASd)
3a: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9a)
3b: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9b)
3c: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9c)
3d: (5S)-2,5-DIHYDROXY-3-METHYLCYCLOHE... (TR9d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
IAS
4
Mod. Amino Acid
BETA-L-ASPARTIC ACID
3
TR9
4
Ligand/Ion
(5S)-2,5-DIHYDROXY-3-METHYLCYCLOHEX-2-ENE-1,4-DIONE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:115 , ALA A:116 , LEU A:138 , CA A:420 , CA A:421 , HOH A:450 , HOH A:451 , HOH A:457 , HOH A:464 , HOH A:470 , HOH A:502 , HOH A:514 , GLU B:130 , HOH B:429
BINDING SITE FOR RESIDUE TR9 A 500
02
AC2
SOFTWARE
GLU A:130 , CYS B:115 , ALA B:116 , LYS B:137 , LEU B:138 , CA B:421 , CA B:422 , HOH B:458 , HOH B:466 , HOH B:503 , HOH B:524 , HOH B:531
BINDING SITE FOR RESIDUE TR9 B 500
03
AC3
SOFTWARE
CYS C:115 , ALA C:116 , LEU C:138 , CA C:420 , CA C:421 , HOH C:489 , PHE D:127 , GLU D:130
BINDING SITE FOR RESIDUE TR9 C 500
04
AC4
SOFTWARE
ILE C:126 , PHE C:127 , GLU C:130 , CYS D:115 , ALA D:116 , LEU D:138 , CA D:420 , CA D:421
BINDING SITE FOR RESIDUE TR9 D 500
05
AC5
SOFTWARE
LEU A:138 , HOH A:451 , HOH A:457 , TR9 A:500
BINDING SITE FOR RESIDUE CA A 420
06
AC6
SOFTWARE
ALA A:116 , HOH A:446 , HOH A:464 , HOH A:470 , TR9 A:500 , HOH A:502
BINDING SITE FOR RESIDUE CA A 421
07
AC7
SOFTWARE
ILE A:136 , ILE B:136 , HOH B:465 , HOH B:483 , HOH B:520
BINDING SITE FOR RESIDUE CA B 420
08
AC8
SOFTWARE
LEU B:138 , HOH B:466 , TR9 B:500 , HOH B:524 , HOH B:542
BINDING SITE FOR RESIDUE CA B 421
09
AC9
SOFTWARE
ALA B:116 , HOH B:425 , HOH B:476 , HOH B:490 , TR9 B:500 , HOH B:503 , HOH B:531
BINDING SITE FOR RESIDUE CA B 422
10
BC1
SOFTWARE
PHE B:104 , GLN B:106 , HOH B:528 , HOH B:575 , ASN C:148
BINDING SITE FOR RESIDUE CA B 423
11
BC2
SOFTWARE
ALA C:116 , HOH C:489 , TR9 C:500
BINDING SITE FOR RESIDUE CA C 420
12
BC3
SOFTWARE
LEU C:138 , TR9 C:500 , GLU D:130
BINDING SITE FOR RESIDUE CA C 421
13
BC4
SOFTWARE
GLU C:130 , LEU D:138 , HOH D:434 , TR9 D:500
BINDING SITE FOR RESIDUE CA D 420
14
BC5
SOFTWARE
ALA D:116 , HOH D:460 , TR9 D:500
BINDING SITE FOR RESIDUE CA D 421
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3kqaa_ (A:)
1b: SCOP_d3kqab_ (B:)
1c: SCOP_d3kqac_ (C:)
1d: SCOP_d3kqad_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
automated matches
(15)
Enterobacter cloacae [TaxId: 550]
(1)
1a
d3kqaa_
A:
1b
d3kqab_
B:
1c
d3kqac_
C:
1d
d3kqad_
D:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3kqaA01 (A:1-18,A:230-418)
1b: CATH_3kqaB01 (B:1-18,B:230-418)
1c: CATH_3kqaC01 (C:1-18,C:230-418)
1d: CATH_3kqaD01 (D:1-18,D:230-418)
1e: CATH_3kqaA02 (A:21-228)
1f: CATH_3kqaB02 (B:21-228)
1g: CATH_3kqaC02 (C:21-228)
1h: CATH_3kqaD02 (D:21-228)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Enterobacter cloacae. Organism_taxid: 550.
(4)
1a
3kqaA01
A:1-18,A:230-418
1b
3kqaB01
B:1-18,B:230-418
1c
3kqaC01
C:1-18,C:230-418
1d
3kqaD01
D:1-18,D:230-418
1e
3kqaA02
A:21-228
1f
3kqaB02
B:21-228
1g
3kqaC02
C:21-228
1h
3kqaD02
D:21-228
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_3kqaD01 (D:6-406)
1b: PFAM_EPSP_synthase_3kqaD02 (D:6-406)
1c: PFAM_EPSP_synthase_3kqaD03 (D:6-406)
1d: PFAM_EPSP_synthase_3kqaD04 (D:6-406)
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)
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)
Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56)
(6)
1a
EPSP_synthase-3kqaD01
D:6-406
1b
EPSP_synthase-3kqaD02
D:6-406
1c
EPSP_synthase-3kqaD03
D:6-406
1d
EPSP_synthase-3kqaD04
D:6-406
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Asymmetric Unit 1
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Asym.Unit (273 KB)
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