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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3KPZ
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A NOVEL VITAMIN D3 ANALOGUE, ZK203278 SHOWING DISSOCIATED PROFILE
Authors
:
N. Rochel, D. Moras
Date
:
17 Nov 09 (Deposition) - 12 Oct 11 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nuclear Receptor, Agonist, Dna-Binding, Transcription Regulation, Transcription-Hormone Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Rochel, D. Moras
Crystal Structure Of A Vitamin D3 Analog, Zk203278, Showing Dissociated Profile.
Anticancer Res. V. 32 335 2012
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (1R,3S,5Z)-5-[(2E)-2-{(1R,3AS,7AR)... (ZNEa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZNE
1
Ligand/Ion
(1R,3S,5Z)-5-[(2E)-2-{(1R,3AS,7AR)-1-[(1R,5S)-5-HYDROXY-1-METHYL-5-(1,3-THIAZOL-2-YL)PENTYL]-7A-METHYLOCTAHYDRO-4H-INDEN-4-YLIDENE}ETHYLIDENE]-4-METHYLIDENECYCLOHEXANE-1,3-DIOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:143 , TYR A:147 , ALA A:231 , LEU A:233 , SER A:237 , ARG A:274 , SER A:275 , SER A:278 , TRP A:286 , CYS A:288 , HIS A:305 , LEU A:313 , HIS A:397 , TYR A:401 , LEU A:414 , VAL A:418
BINDING SITE FOR RESIDUE ZNE A 525
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029309 (L230V, chain A, )
2: VAR_004664 (R274L, chain A, )
3: VAR_004665 (H305Q, chain A, )
4: VAR_004666 (I314S, chain A, )
5: VAR_029310 (T362I, chain A, )
6: VAR_004667 (R391C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029309
L
230
V
VDR_HUMAN
Polymorphism
11574090
A
L
230
V
2
UniProt
VAR_004664
R
274
L
VDR_HUMAN
Disease (VDDR2A)
---
A
R
274
L
3
UniProt
VAR_004665
H
305
Q
VDR_HUMAN
Disease (VDDR2A)
---
A
H
305
Q
4
UniProt
VAR_004666
I
314
S
VDR_HUMAN
Disease (VDDR2A)
---
A
I
314
S
5
UniProt
VAR_029310
T
362
I
VDR_HUMAN
Polymorphism
11574115
A
T
362
I
6
UniProt
VAR_004667
R
391
C
VDR_HUMAN
Disease (VDDR2A)
---
A
R
391
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(6, 6)
Info
All Exons
Exon 1.6 (A:120-154)
Exon 1.7 (A:155-165)
Exon 1.8 (A:217-252)
Exon 1.9 (A:252-303)
Exon 1.10 (A:303-342)
Exon 1.11 (A:342-423)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11
7: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000395324
1
ENSE00001485612
chr12:
48298814-48298738
77
VDR_HUMAN
-
0
0
-
-
1.3
ENST00000395324
3
ENSE00001354497
chr12:
48276557-48276477
81
VDR_HUMAN
-
0
0
-
-
1.4
ENST00000395324
4
ENSE00000888048
chr12:
48272898-48272751
148
VDR_HUMAN
1-49
49
0
-
-
1.5
ENST00000395324
5
ENSE00000738168
chr12:
48258960-48258830
131
VDR_HUMAN
49-93
45
0
-
-
1.6
ENST00000395324
6
ENSE00000738167
chr12:
48251471-48251287
185
VDR_HUMAN
93-154
62
1
A:120-154
35
1.7
ENST00000395324
7
ENSE00000738166
chr12:
48251032-48250912
121
VDR_HUMAN
155-195
41
1
A:155-165
11
1.8
ENST00000395324
8
ENSE00000738165
chr12:
48249584-48249413
172
VDR_HUMAN
195-252
58
1
A:217-252
36
1.9
ENST00000395324
9
ENSE00000738164
chr12:
48240591-48240440
152
VDR_HUMAN
252-303
52
1
A:252-303
52
1.10
ENST00000395324
10
ENSE00000738163
chr12:
48240234-48240118
117
VDR_HUMAN
303-342
40
1
A:303-342
40
1.11
ENST00000395324
11
ENSE00001419012
chr12:
48238788-48235322
3467
VDR_HUMAN
342-427
86
1
A:342-423
82
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kpza_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Vitamin D nuclear receptor
(37)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d3kpza_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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