PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3KON
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (47 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF COBALT (II) HUMAN CARBONIC ANHYDRASE II AT PH 11.0
Authors
:
B. S. Avvaru
Date
:
13 Nov 09 (Deposition) - 25 Aug 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Carbonic Anhydrase, Metalloenzyme, Cobalt Substitution, Crystal Ph, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Avvaru, D. J. Arenas, C. Tu, D. B. Tanner, R. Mckenna, D. N. Silverman
Comparison Of Solution And Crystal Properties Of Co(Ii)-Substituted Human Carbonic Anhydrase Ii.
Arch. Biochem. Biophys. V. 502 53 2010
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
1
Ligand/Ion
COBALT (II) ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:94 , HIS A:96 , HIS A:119 , HOH A:473
BINDING SITE FOR RESIDUE CO A 262
[
close Site info
]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001380 (K18E, chain A, )
2: VAR_001381 (Q92P, chain A, )
3: VAR_021009 (H94Y, chain A, )
4: VAR_001382 (H107Y, chain A, )
5: VAR_021010 (G145R, chain A, )
6: VAR_001383 (P237H, chain A, )
7: VAR_001384 (N253D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001380
K
18
E
CAH2_HUMAN
Unclassified
---
A
K
18
E
2
UniProt
VAR_001381
Q
92
P
CAH2_HUMAN
Disease (OPTB3)
---
A
Q
92
P
3
UniProt
VAR_021009
H
94
Y
CAH2_HUMAN
Disease (OPTB3)
---
A
H
94
Y
4
UniProt
VAR_001382
H
107
Y
CAH2_HUMAN
Disease (OPTB3)
---
A
H
107
Y
5
UniProt
VAR_021010
G
144
R
CAH2_HUMAN
Disease (OPTB3)
---
A
G
145
R
6
UniProt
VAR_001383
P
236
H
CAH2_HUMAN
Unclassified
---
A
P
237
H
7
UniProt
VAR_001384
N
252
D
CAH2_HUMAN
Polymorphism
2228063
A
N
253
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ALPHA_CA_2 (A:3-260)
2: ALPHA_CA_1 (A:105-121)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_CA_2
PS51144
Alpha-carbonic anhydrases profile.
CAH2_HUMAN
3-259
1
A:3-260
2
ALPHA_CA_1
PS00162
Alpha-carbonic anhydrases signature.
CAH2_HUMAN
105-121
1
A:105-121
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.1a (A:3-12)
Exon 1.2 (A:12-78)
Exon 1.4a (A:78-117)
Exon 1.5a (A:118-149 (gaps))
Exon 1.6 (A:150-170)
Exon 1.7b (A:171-222)
Exon 1.8b (A:223-261)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4a
4: Boundary 1.4a/1.5a
5: Boundary 1.5a/1.6
6: Boundary 1.6/1.7b
7: Boundary 1.7b/1.8b
8: Boundary 1.8b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000285379
1a
ENSE00000980911
chr8:
86376081-86376344
264
CAH2_HUMAN
1-12
12
1
A:3-12
10
1.2
ENST00000285379
2
ENSE00000795076
chr8:
86377501-86377698
198
CAH2_HUMAN
12-78
67
1
A:12-78
67
1.4a
ENST00000285379
4a
ENSE00000698423
chr8:
86385922-86386040
119
CAH2_HUMAN
78-117
40
1
A:78-117
40
1.5a
ENST00000285379
5a
ENSE00000698425
chr8:
86386553-86386645
93
CAH2_HUMAN
118-148
31
1
A:118-149 (gaps)
32
1.6
ENST00000285379
6
ENSE00000698427
chr8:
86388027-86388089
63
CAH2_HUMAN
149-169
21
1
A:150-170
21
1.7b
ENST00000285379
7b
ENSE00000698429
chr8:
86389349-86389504
156
CAH2_HUMAN
170-221
52
1
A:171-222
52
1.8b
ENST00000285379
8b
ENSE00001195849
chr8:
86392899-86393693
795
CAH2_HUMAN
222-260
39
1
A:223-261
39
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kona_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Carbonic anhydrase
(525)
Superfamily
:
Carbonic anhydrase
(525)
Family
:
Carbonic anhydrase
(513)
Protein domain
:
Carbonic anhydrase
(499)
Human (Homo sapiens), erythrocytes, isozyme II [TaxId: 9606]
(458)
1a
d3kona_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Carb_anhydrase_3konA01 (A:5-260)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Carb_anhydrase]
(168)
Family
:
Carb_anhydrase
(168)
Homo sapiens (Human)
(157)
1a
Carb_anhydrase-3konA01
A:5-260
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (51 KB)
Header - Asym.Unit
Biol.Unit 1 (47 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3KON
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
