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3KN0
Biol. Unit 1
Info
Asym.Unit (149 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (145 KB)
Biol.Unit 3 (145 KB)
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(1)
Title
:
STRUCTURE OF BACE BOUND TO SCH708236
Authors
:
C. Strickland, Y. Wang
Date
:
11 Nov 09 (Deposition) - 19 Jan 10 (Release) - 16 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Bace1, Alzheimer'S, Alternative Splicing, Aspartyl Protease, Disulfide Bond, Endoplasmic Reticulum, Endosome, Glycoprotein, Golgi Apparatus, Hydrolase, Membrane, Polymorphism, Protease, Transmembrane, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. S. Wang, C. Strickland, J. H. Voigt, M. E. Kennedy, B. M. Beyer, M. M. Senior, E. M. Smith, T. L. Nechuta, V. S. Madison, M. Czarniecki, B. A. Mckittrick, A. W. Stamford, E. M. Parker, J. C. Hunter, W. J. Greenlee, D. F. Wyss
Application Of Fragment-Based Nmr Screening, X-Ray Crystallography, Structure-Based Design, And Focused Chemical Library Design To Identify Novel Mum Leads For The Development Of Nm Bace-1 (Beta-Site App Cleaving Enzyme 1) Inhibitors.
J. Med. Chem. V. 53 942 2010
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 3-[2-(3-{[(FURAN-2-YLMETHYL)(METHY... (3TOa)
1b: 3-[2-(3-{[(FURAN-2-YLMETHYL)(METHY... (3TOb)
2a: L(+)-TARTARIC ACID (TLAa)
2b: L(+)-TARTARIC ACID (TLAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3TO
2
Ligand/Ion
3-[2-(3-{[(FURAN-2-YLMETHYL)(METHYL)AMINO]METHYL}PHENYL)ETHYL]PYRIDIN-2-AMINE
2
TLA
2
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:71 , GLN A:73 , GLY A:74 , ASP A:93 , TYR A:132 , ILE A:179 , ASP A:289 , SER A:290 , GLY A:291 , THR A:292 , THR A:293
BINDING SITE FOR RESIDUE 3TO A 501
2
AC2
SOFTWARE
ARG A:68 , ASN A:89 , HIS A:110 , ARG A:111 , ASN A:175 , HOH A:554 , HOH A:612 , HOH A:627
BINDING SITE FOR RESIDUE TLA A 502
3
AC3
SOFTWARE
SER B:71 , GLN B:73 , GLY B:74 , ASP B:93 , GLY B:95 , TYR B:132 , GLN B:134 , ILE B:179 , ASP B:289 , SER B:290 , GLY B:291 , THR B:292 , THR B:293
BINDING SITE FOR RESIDUE 3TO B 501
4
AC4
SOFTWARE
ARG B:68 , ASN B:89 , HIS B:110 , ARG B:111 , ASN B:175 , HOH B:507 , HOH B:572 , HOH B:662
BINDING SITE FOR RESIDUE TLA B 502
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_060692 (V265A, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_060692
V
265
A
BACE1_HUMAN
Polymorphism
28989503
A/B
V
265
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:75-416,B:75-416)
2: ASP_PROTEASE (A:90-101,B:90-101)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
BACE1_HUMAN
75-416
2
A:75-416
B:75-416
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
BACE1_HUMAN
90-101
2
A:90-101
B:90-101
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3kn0a_ (A:)
1b: SCOP_d3kn0b_ (B:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Pepsin-like
(505)
Protein domain
:
beta-secretase (memapsin)
(237)
Human (Homo sapiens) [TaxId: 9606]
(237)
1a
d3kn0a_
A:
1b
d3kn0b_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3kn0B01 (B:75-207)
1b: CATH_3kn0B02 (B:208-446)
1c: CATH_3kn0A02 (A:208-447)
1d: CATH_3kn0A01 (A:75-207)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Human (Homo sapiens)
(161)
1a
3kn0B01
B:75-207
1b
3kn0B02
B:208-446
1c
3kn0A02
A:208-447
1d
3kn0A01
A:75-207
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Asp_3kn0B01 (B:74-418)
1b: PFAM_Asp_3kn0B02 (B:74-418)
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Clan
:
Peptidase_AA
(368)
Family
:
Asp
(155)
Homo sapiens (Human)
(116)
1a
Asp-3kn0B01
B:74-418
1b
Asp-3kn0B02
B:74-418
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Asymmetric Unit 1
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Asym.Unit (149 KB)
Header - Asym.Unit
Biol.Unit 1 (145 KB)
Header - Biol.Unit 1
Biol.Unit 2 (145 KB)
Header - Biol.Unit 2
Biol.Unit 3 (145 KB)
Header - Biol.Unit 3
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