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3KMM
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
STRUCTURE OF HUMAN LCK KINASE WITH A SMALL MOLECULE INHIBITOR
Authors
:
B. J. Graves, A. Surgenor, W. Harris, I. Smith, S. Orchard, H. Flotow, E.
Date
:
10 Nov 09 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tyrosine Kinase, Atp-Binding, Kinase, Nucleotide-Binding, Phosphoprotein, Transferase, Tyrosine-Protein Kinase, Transferase- Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Graves, A. Surgenor, W. Harris, I. Smith, S. Orchard, H. Flotow, E. Murray
Structure Of Human Lck Kinase With A Small Molecule Inhibitor
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 3)
Info
All Hetero Components
1a: 3-(2,6-DICHLOROPHENYL)-7-({4-[2-(D... (LHLa)
2a: O-PHOSPHOTYROSINE (PTRa)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LHL
1
Ligand/Ion
3-(2,6-DICHLOROPHENYL)-7-({4-[2-(DIETHYLAMINO)ETHOXY]PHENYL}AMINO)-1-METHYL-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-2(1H)-ONE
2
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:43 , VAL A:259 , ALA A:271 , LYS A:273 , GLU A:288 , THR A:316 , GLU A:317 , TYR A:318 , MET A:319 , GLY A:322 , LEU A:371 , ASP A:382
BINDING SITE FOR RESIDUE LHL A 1
2
AC2
SOFTWARE
HOH A:17 , HOH A:68 , GLN A:298 , ARG A:299 , SER A:377 , LYS A:379 , ARG A:458 , ARG A:474
BINDING SITE FOR RESIDUE SO4 A 901
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071291 (L341P, chain A, )
2: VAR_013465 (A353V, chain A, )
3: VAR_013466 (P447L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071291
L
341
P
LCK_HUMAN
Disease (IMD22)
---
A
L
341
P
2
UniProt
VAR_013465
A
353
V
LCK_HUMAN
Unclassified
---
A
A
353
V
3
UniProt
VAR_013466
P
447
L
LCK_HUMAN
Unclassified
---
A
P
447
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:251-273)
2: PROTEIN_KINASE_TYR (A:360-372)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
LCK_HUMAN
251-273
1
A:251-273
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
LCK_HUMAN
360-372
1
A:360-372
[
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Exons
(6, 6)
Info
All Exons
Exon 1.6b (A:231-262)
Exon 1.7a (A:262-322)
Exon 1.8b (A:322-347)
Exon 1.8e (A:348-399)
Exon 1.9b (A:399-443)
Exon 1.10d (A:443-501)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6b
2: Boundary 1.6b/1.7a
3: Boundary 1.7a/1.8b
4: Boundary 1.8b/1.8e
5: Boundary 1.8e/1.9b
6: Boundary 1.9b/1.10d
7: Boundary 1.10d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000336890
1a
ENSE00001532907
chr1:
32716840-32716972
133
LCK_HUMAN
-
0
0
-
-
1.2h
ENST00000336890
2h
ENSE00002175789
chr1:
32739926-32740035
110
LCK_HUMAN
1-35
35
0
-
-
1.3a
ENST00000336890
3a
ENSE00001301511
chr1:
32740338-32740419
82
LCK_HUMAN
36-63
28
0
-
-
1.3f
ENST00000336890
3f
ENSE00001323374
chr1:
32740594-32740684
91
LCK_HUMAN
63-93
31
0
-
-
1.3h
ENST00000336890
3h
ENSE00001321874
chr1:
32740922-32741020
99
LCK_HUMAN
93-126
34
0
-
-
1.4c
ENST00000336890
4c
ENSE00001299684
chr1:
32741170-32741273
104
LCK_HUMAN
126-161
36
0
-
-
1.5
ENST00000336890
5
ENSE00001330813
chr1:
32741515-32741664
150
LCK_HUMAN
161-211
51
0
-
-
1.6b
ENST00000336890
6b
ENSE00001307776
chr1:
32741938-32742090
153
LCK_HUMAN
211-262
52
1
A:231-262
32
1.7a
ENST00000336890
7a
ENSE00001327737
chr1:
32742208-32742387
180
LCK_HUMAN
262-322
61
1
A:262-322
61
1.8b
ENST00000336890
8b
ENSE00001292351
chr1:
32745272-32745348
77
LCK_HUMAN
322-347
26
1
A:322-347
26
1.8e
ENST00000336890
8e
ENSE00001706218
chr1:
32745442-32745595
154
LCK_HUMAN
348-399
52
1
A:348-399
52
1.9b
ENST00000336890
9b
ENSE00001805246
chr1:
32745680-32745811
132
LCK_HUMAN
399-443
45
1
A:399-443
45
1.10d
ENST00000336890
10d
ENSE00001348148
chr1:
32751115-32751766
652
LCK_HUMAN
443-509
67
1
A:443-501
59
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kmma_ (A:)
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Classes
(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Lymphocyte kinase (lck)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3kmma_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3kmmA01 (A:245-494)
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Clans
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)
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)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3kmmA01
A:245-494
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Asymmetric Unit 1
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