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Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (26 KB)
Biol.Unit 3 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A VIMENTIN FRAGMENT
Authors
:
S. Nicolet, S. V. Strelkov
Date
:
09 Nov 09 (Deposition) - 26 May 10 (Release) - 26 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
2A, L2, Alpha-Helix, Coiled-Coil, Parallel Helices, Coiled Coil, Intermediate Filament, Vimentin, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Nicolet, H. Herrmann, U. Aebi, S. V. Strelkov
Atomic Structure Of Vimentin Coil 2.
J. Struct. Biol. V. 170 369 2010
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close entry info
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
4a: HEXAETHYLENE GLYCOL (P6Ga)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
6a: TRIETHYLENE GLYCOL (PGEa)
7a: SAMARIUM (III) ION (SMa)
7b: SAMARIUM (III) ION (SMb)
7c: SAMARIUM (III) ION (SMc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CA
6
Ligand/Ion
CALCIUM ION
3
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
4
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
5
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
7
SM
3
Ligand/Ion
SAMARIUM (III) ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:280 , ASN A:283 , GLU A:286 , ALA A:287 , PG4 C:2 , ASN C:283 , GLU C:286 , TRP C:290 , TYR C:291
BINDING SITE FOR RESIDUE P33 A 1
2
AC2
SOFTWARE
VAL B:279 , ALA B:280 , ASN B:283 , PG4 C:2 , 1PE D:3 , ASN D:283 , ALA D:287 , TYR D:291
BINDING SITE FOR RESIDUE P6G B 4
3
AC3
SOFTWARE
1PE D:3
BINDING SITE FOR RESIDUE SM B 1
4
AC4
SOFTWARE
P33 A:1 , GLU A:286 , ALA A:287 , TYR A:291 , P6G B:4 , TYR C:276 , VAL C:279 , ALA C:280 , ASN C:283 , LEU C:284
BINDING SITE FOR RESIDUE PG4 C 2
5
AC5
SOFTWARE
PHE B:295 , ARG C:273 , GLU C:277
BINDING SITE FOR RESIDUE PG4 C 5
6
AC6
SOFTWARE
SM B:1 , P6G B:4 , GLU B:286 , TRP B:290 , TYR B:291 , TYR D:276 , VAL D:279 , ALA D:280 , ASN D:283
BINDING SITE FOR RESIDUE 1PE D 3
7
AC7
SOFTWARE
GLU C:289 , GLU D:286
BINDING SITE FOR RESIDUE PGE D 6
8
AC8
SOFTWARE
LYS D:294
BINDING SITE FOR RESIDUE CA D 8
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(2, 8)
Info
All Exons
Exon 1.6 (A:264-294 | B:264-294 | C:263-294 ...)
Exon 1.7a (A:295-334 | B:295-334 | C:295-333 ...)
View:
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All Exon Boundaries
1: Boundary 1.5b/1.6
2: Boundary 1.6/1.7a
3: Boundary 1.7a/1.8a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3d
ENST00000224237
3d
ENSE00002186269
chr10:
17271277-17271984
708
VIME_HUMAN
1-188
188
0
-
-
1.4c
ENST00000224237
4c
ENSE00001270958
chr10:
17272649-17272709
61
VIME_HUMAN
188-208
21
0
-
-
1.5b
ENST00000224237
5b
ENSE00000692805
chr10:
17275586-17275681
96
VIME_HUMAN
209-240
32
0
-
-
1.6
ENST00000224237
6
ENSE00000692809
chr10:
17275769-17275930
162
VIME_HUMAN
241-294
54
4
A:264-294
B:264-294
C:263-294
D:265-294
31
31
32
30
1.7a
ENST00000224237
7a
ENSE00000692812
chr10:
17276692-17276817
126
VIME_HUMAN
295-336
42
4
A:295-334
B:295-334
C:295-333
D:295-334
40
40
39
40
1.8a
ENST00000224237
8a
ENSE00001270949
chr10:
17277168-17277388
221
VIME_HUMAN
337-410
74
0
-
-
1.8c
ENST00000224237
8c
ENSE00001121153
chr10:
17277845-17277888
44
VIME_HUMAN
410-425
16
0
-
-
1.8e
ENST00000224237
8e
ENSE00000815998
chr10:
17278293-17278378
86
VIME_HUMAN
425-453
29
0
-
-
1.9
ENST00000224237
9
ENSE00001906870
chr10:
17279229-17279592
364
VIME_HUMAN
454-466
13
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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