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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
3KKU
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
CRUZAIN IN COMPLEX WITH A NON-COVALENT LIGAND
Authors
:
R. S. Ferreira, O. Eidam, B. K. Shoichet
Date
:
06 Nov 09 (Deposition) - 07 Jul 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.28
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Autocatalytic Cleavage, Glycoprotein, Protease, Thiol Protease, Zymogen, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. S. Ferreira, A. Simeonov, A. Jadhav, O. Eidam, B. T. Mott, M. J. Keiser, J. H. Mckerrow, D. J. Maloney, J. J. Irwin, B. K. Shoichet
Complementarity Between A Docking And A High-Throughput Screen In Discovering New Cruzain Inhibitors.
J. Med. Chem. V. 53 4891 2010
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: N-[2-(1H-BENZIMIDAZOL-2-YL)ETHYL]-... (B95a)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: S-METHYL METHANESULFONOTHIOATE (Z22a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B95
1
Ligand/Ion
N-[2-(1H-BENZIMIDAZOL-2-YL)ETHYL]-2-(2-BROMOPHENOXY)ACETAMIDE
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
Z22
1
Ligand/Ion
S-METHYL METHANESULFONOTHIOATE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:23 , CYS A:25 , TRP A:26 , GLY A:65 , GLY A:66 , LEU A:67 , MET A:68 , ALA A:138 , GLN A:159 , LEU A:160 , ASP A:161 , HIS A:162 , GLY A:163 , Z22 A:217 , HOH A:531
BINDING SITE FOR RESIDUE B95 A 216
02
AC2
SOFTWARE
ARG A:8 , VAL A:13 , THR A:14 , TYR A:193 , HOH A:232 , HOH A:297 , HOH A:505
BINDING SITE FOR RESIDUE EDO A 401
03
AC3
SOFTWARE
THR A:186 , GLN A:187 , TRP A:188 , GLY A:189 , GLU A:191 , HOH A:319
BINDING SITE FOR RESIDUE EDO A 402
04
AC4
SOFTWARE
ASP A:121 , GLU A:122 , ASN A:201 , LYS A:206 , HOH A:229 , EDO A:407 , HOH A:519
BINDING SITE FOR RESIDUE EDO A 403
05
AC5
SOFTWARE
LYS A:17 , ASP A:18 , GLU A:86 , TYR A:91 , HOH A:225
BINDING SITE FOR RESIDUE EDO A 404
06
AC6
SOFTWARE
ASN A:79 , ASN A:80 , ALA A:82 , TYR A:84 , HOH A:422
BINDING SITE FOR RESIDUE EDO A 405
07
AC7
SOFTWARE
THR A:59 , ASN A:70 , TRP A:74 , GLN A:77 , HOH A:353
BINDING SITE FOR RESIDUE EDO A 406
08
AC8
SOFTWARE
GLU A:122 , LYS A:198 , GLY A:199 , HOH A:229 , HOH A:340 , EDO A:403 , HOH A:489 , HOH A:518
BINDING SITE FOR RESIDUE EDO A 407
09
AC9
SOFTWARE
TRP A:128 , ASN A:132 , HOH A:428
BINDING SITE FOR RESIDUE EDO A 408
10
BC1
SOFTWARE
HIS A:43 , PRO A:44 , THR A:85 , THR A:107 , HOH A:421 , HOH A:447
BINDING SITE FOR RESIDUE EDO A 409
11
BC2
SOFTWARE
THR A:14 , ALA A:15 , LYS A:17 , LEU A:45 , ASN A:47 , HOH A:429
BINDING SITE FOR RESIDUE EDO A 410
12
BC3
SOFTWARE
GLN A:19 , CYS A:25 , HIS A:162 , B95 A:216 , HOH A:273 , HOH A:341 , HOH A:342
BINDING SITE FOR RESIDUE Z22 A 217
[
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]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CYSP_TRYCR_009 (S24G, chain A, )
2: VAR_CYSP_TRYCR_010 (S64G, chain A, )
3: VAR_CYSP_TRYCR_011 (A82G, chain A, )
4: VAR_CYSP_TRYCR_012 (V164F, chain A, )
5: VAR_CYSP_TRYCR_013 (V164L, chain A, )
6: VAR_CYSP_TRYCR_014 (T186A, chain A, )
7: VAR_CYSP_TRYCR_015 (E191D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CYSP_TRYCR_009
*
S
146
G
CYSP_TRYCR
---
---
A
S
24
G
2
UniProt
VAR_CYSP_TRYCR_010
*
S
186
G
CYSP_TRYCR
---
---
A
S
64
G
3
UniProt
VAR_CYSP_TRYCR_011
*
A
204
G
CYSP_TRYCR
---
---
A
A
82
G
4
UniProt
VAR_CYSP_TRYCR_012
*
V
286
F
CYSP_TRYCR
---
---
A
V
164
F
5
UniProt
VAR_CYSP_TRYCR_013
*
V
286
L
CYSP_TRYCR
---
---
A
V
164
L
6
UniProt
VAR_CYSP_TRYCR_014
*
T
308
A
CYSP_TRYCR
---
---
A
T
186
A
7
UniProt
VAR_CYSP_TRYCR_015
*
E
313
D
CYSP_TRYCR
---
---
A
E
191
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:19-30)
2: THIOL_PROTEASE_HIS (A:160-170)
3: THIOL_PROTEASE_ASN (A:177-196)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CYSP_TRYCR
141-152
1
A:19-30
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CYSP_TRYCR
282-292
1
A:160-170
3
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CYSP_TRYCR
299-318
1
A:177-196
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3kkua_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Cruzain
(20)
Trypanosoma cruzi [TaxId: 5693]
(20)
1a
d3kkua_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_C1_3kkuA01 (A:1-213)
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Clans
(
)
(
)
Families
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(
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Organisms
(
)
(
)
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C1
(81)
Trypanosoma cruzi
(6)
1a
Peptidase_C1-3kkuA01
A:1-213
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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