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3KJM
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
LEU492ALA MUTANT OF MAIZE CYTOKININ OXIDASE/DEHYDROGENASE COMPLEXED WITH PHENYLUREA INHIBITOR CPPU
Authors
:
D. Kopecny, P. Briozzo
Date
:
03 Nov 09 (Deposition) - 26 May 10 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cytokinin Oxidase/Dehydrogenase, Flavoprotein, Fad, Inhibitor, Glycoprotein, Secreted, Oxidoreductase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kopecny, P. Briozzo, H. Popelkova, M. Sebela, R. Koncitikova, L. Spichal, J. Nisler, C. Madzak, I. Frebort, M. Laloue, N. Houba-Heri
Phenyl- And Benzylurea Cytokinins As Competitive Inhibitors Of Cytokinin Oxidase/Dehydrogenase: A Structural Study.
Biochimie V. 92 1052 2010
[
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 1-(2-CHLOROPYRIDIN-4-YL)-3-PHENYLU... (245a)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
245
1
Ligand/Ion
1-(2-CHLOROPYRIDIN-4-YL)-3-PHENYLUREA
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
GOL
8
Ligand/Ion
GLYCEROL
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:5 , HOH A:7 , PHE A:61 , PHE A:100 , GLY A:102 , ARG A:103 , GLY A:104 , HIS A:105 , SER A:106 , GLN A:110 , ALA A:111 , THR A:168 , ASP A:169 , TYR A:170 , LEU A:173 , THR A:174 , GLY A:176 , GLY A:177 , SER A:180 , ASN A:181 , GLY A:183 , ILE A:184 , GLY A:233 , VAL A:234 , ILE A:235 , TRP A:397 , TYR A:491 , SER A:527 , GLN A:530 , 245 A:601 , HOH A:728
BINDING SITE FOR RESIDUE FAD A 600
02
AC2
SOFTWARE
ASP A:169 , VAL A:378 , LEU A:388 , TRP A:397 , ASN A:399 , ILE A:429 , SER A:456 , LEU A:458 , TYR A:491 , GOL A:537 , FAD A:600
BINDING SITE FOR RESIDUE 245 A 601
03
AC3
SOFTWARE
THR A:59 , ASN A:63 , ILE A:64 , HOH A:568
BINDING SITE FOR RESIDUE NAG A 701
04
AC4
SOFTWARE
PRO A:130 , PRO A:131 , ARG A:132 , ASN A:134 , ARG A:237 , NAG A:703
BINDING SITE FOR RESIDUE NAG A 702
05
AC5
SOFTWARE
NAG A:702
BINDING SITE FOR RESIDUE NAG A 703
06
AC6
SOFTWARE
ASN A:294 , GLN A:295 , ASN A:323 , ALA A:324 , HOH A:576 , NAG A:705
BINDING SITE FOR RESIDUE NAG A 704
07
AC7
SOFTWARE
NAG A:704
BINDING SITE FOR RESIDUE NAG A 705
08
AC8
SOFTWARE
ASN A:323 , THR A:325 , HOH A:562 , HOH A:566 , HOH A:578
BINDING SITE FOR RESIDUE NAG A 706
09
AC9
SOFTWARE
SER A:436 , TRP A:438 , ASP A:439
BINDING SITE FOR RESIDUE GOL A 535
10
BC1
SOFTWARE
PRO A:33 , TRP A:34 , LEU A:38 , THR A:91 , TRP A:94
BINDING SITE FOR RESIDUE GOL A 536
11
BC2
SOFTWARE
ASN A:303 , LYS A:387 , LEU A:388 , GOL A:538 , 245 A:601 , HOH A:689 , HOH A:777 , HOH A:778
BINDING SITE FOR RESIDUE GOL A 537
12
BC3
SOFTWARE
ASP A:300 , ASN A:303 , GLY A:426 , PRO A:427 , GOL A:537 , HOH A:818
BINDING SITE FOR RESIDUE GOL A 538
13
BC4
SOFTWARE
ASP A:440 , GLY A:441 , MET A:442 , SER A:443 , LYS A:509 , ARG A:512 , PHE A:513
BINDING SITE FOR RESIDUE GOL A 539
14
BC5
SOFTWARE
TYR A:488 , LYS A:489 , THR A:490 , HIS A:495 , ASP A:500 , HIS A:504 , HOH A:775
BINDING SITE FOR RESIDUE GOL A 540
15
BC6
SOFTWARE
ARG A:268 , LEU A:269 , ARG A:273 , PRO A:283 , THR A:356 , HOH A:681
BINDING SITE FOR RESIDUE GOL A 541
16
BC7
SOFTWARE
LEU A:354 , LEU A:357 , TYR A:359 , GLU A:361 , HOH A:640
BINDING SITE FOR RESIDUE GOL A 542
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:65-245)
2: OX2_COVAL_FAD (A:69-105)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
CKX1_MAIZE
65-245
1
A:65-245
2
OX2_COVAL_FAD
PS00862
Oxygen oxidoreductases covalent FAD-binding site.
CKX1_MAIZE
69-105
1
A:69-105
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3kjma1 (A:33-245)
2a: SCOP_d3kjma2 (A:246-534)
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Classes
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(
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Maize (Zea mays) [TaxId: 4577]
(10)
1a
d3kjma1
A:33-245
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Cytokinin dehydrogenase 1
(14)
Protein domain
:
automated matches
(10)
Maize (Zea mays) [TaxId: 4577]
(10)
2a
d3kjma2
A:246-534
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Cytokin_bind_3kjmA01 (A:246-533)
2a: PFAM_FAD_binding_4_3kjmA02 (A:69-214)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD-oxidase_C
(26)
Family
:
Cytokin-bind
(8)
Zea mays (Maize)
(7)
1a
Cytokin-bind-3kjmA01
A:246-533
Clan
:
FAD_PCMH
(53)
Family
:
FAD_binding_4
(31)
Zea mays (Maize)
(7)
2a
FAD_binding_4-3kjmA02
A:69-214
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Chain A
Asymmetric Unit 1
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